RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 PRSS50Q9UI38 385 aa12.52□□□□□ -0.41
SKA1-202ENST00000398452 IKZF2Q9UKS7 526 aa12.52□□□□□ -0.41
SKA1-202ENST00000398452 TRIM64A6NGJ6 449 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 CCL21O00585 134 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 IL18BPO95998 194 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 TFP02787 698 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 KRT8P05787 483 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 TACSTD2P09758 323 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 GAAP10253 952 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 CD8BP10966 210 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 CEACAM8P31997 349 aaPredicted RBP12.51□□□□□ -0.41
SKA1-202ENST00000398452 NTF4P34130 210 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 UQCRFS1P47985 274 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 NR1H2P55055 460 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 DBPQ10586 325 aaPredicted RBP12.51□□□□□ -0.41
SKA1-202ENST00000398452 GTF3C1Q12789 2109 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 FOXF2Q12947 444 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 ESPL1Q14674 2120 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 GUSBP1Q15486 140 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 TAF13Q15543 124 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 TBCEQ15813 527 aaPredicted RBP12.51□□□□□ -0.41
SKA1-202ENST00000398452 MEP1BQ16820 701 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 SLC36A2Q495M3 483 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 NRN1LQ496H8 165 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 TEX30Q5JUR7 227 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 C9orf135Q5VTT2 229 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 RNLSQ5VYX0 342 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 ZNF544Q6NX49 715 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 MTFR2Q6P444 385 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 VWA1Q6PCB0 445 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 KLHL24Q6TFL4 600 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 LYPD4Q6UWN0 246 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 SEM1Q6ZVN7 128 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 SLC16A14Q7RTX9 510 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 CDC20BQ86Y33 519 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.51□□□□□ -0.41
SKA1-202ENST00000398452 OTOSQ8NHW6 89 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 WACQ9BTA9 647 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 JAM3Q9BX67 310 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 MROQ9BYG7 248 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 C1orf198Q9H425 327 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 RNF121Q9H920 327 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 EMC7Q9NPA0 242 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 PLSCR4Q9NRQ2 329 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 ERVK13-1Q9NX77 482 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 GALNT8Q9NY28 637 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 TAS2R16Q9NYV7 291 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 COQ3Q9NZJ6 369 aa12.51□□□□□ -0.41
SKA1-202ENST00000398452 ZNF629Q9UEG4 869 aaPredicted RBP12.51□□□□□ -0.41
SKA1-202ENST00000398452 CAB39Q9Y376 341 aaPredicted RBP12.51□□□□□ -0.41
SKA1-202ENST00000398452 A0A1B0GUH1 482 aa12.5□□□□□ -0.41
SKA1-202ENST00000398452 TMEM129A0AVI4 362 aa12.5□□□□□ -0.41
SKA1-202ENST00000398452 EEF1E1-BLOC1S5C9J1V9 151 aa12.5□□□□□ -0.41
SKA1-202ENST00000398452 EEF1E1O43324 174 aaKnown RBP12.5□□□□□ -0.41
SKA1-202ENST00000398452 MPZL1O95297 269 aa12.5□□□□□ -0.41
SKA1-202ENST00000398452 MT-ND5P03915 603 aa12.5□□□□□ -0.41
SKA1-202ENST00000398452 B4GALT1P15291 398 aa12.5□□□□□ -0.41
SKA1-202ENST00000398452 GNLYP22749 145 aa12.5□□□□□ -0.41
SKA1-202ENST00000398452 PSMB9P28065 219 aa12.5□□□□□ -0.41
SKA1-202ENST00000398452 WNT4P56705 351 aa12.5□□□□□ -0.41
SKA1-202ENST00000398452 ARF1P84077 181 aaKnown RBP12.5□□□□□ -0.41
SKA1-202ENST00000398452 EGR3Q06889 387 aa12.5□□□□□ -0.41
SKA1-202ENST00000398452 SRSF1Q07955 248 aaKnown RBP eCLIP12.5□□□□□ -0.41
SKA1-202ENST00000398452 SCRN3Q0VDG4 424 aa12.5□□□□□ -0.41
SKA1-202ENST00000398452 AQP6Q13520 282 aa12.5□□□□□ -0.41
SKA1-202ENST00000398452 GALEQ14376 348 aa12.5□□□□□ -0.41
SKA1-202ENST00000398452 KCNMB1Q16558 191 aa12.5□□□□□ -0.41
SKA1-202ENST00000398452 FAM27BQ5VT28 67 aa12.5□□□□□ -0.41
SKA1-202ENST00000398452 ZNF322Q6U7Q0 402 aaPredicted RBP12.5□□□□□ -0.41
SKA1-202ENST00000398452 Q6ZT83 130 aa12.5□□□□□ -0.41
SKA1-202ENST00000398452 FOXL2NBQ6ZUU3 175 aa12.5□□□□□ -0.41
SKA1-202ENST00000398452 ZNF367Q7RTV3 350 aa12.5□□□□□ -0.41
SKA1-202ENST00000398452 KCTD20Q7Z5Y7 419 aa12.5□□□□□ -0.41
SKA1-202ENST00000398452 BTLAQ7Z6A9 289 aa12.5□□□□□ -0.41
SKA1-202ENST00000398452 KRT77Q7Z794 578 aa12.5□□□□□ -0.41
SKA1-202ENST00000398452 DPPA2Q7Z7J5 298 aa12.5□□□□□ -0.41
SKA1-202ENST00000398452 LINC00346Q8IVM7 164 aa12.5□□□□□ -0.41
SKA1-202ENST00000398452 LRRC18Q8N456 261 aa12.5□□□□□ -0.41
SKA1-202ENST00000398452 SLC22A24Q8N4F4 322 aa12.5□□□□□ -0.41
SKA1-202ENST00000398452 RPRMLQ8N4K4 120 aa12.5□□□□□ -0.41
SKA1-202ENST00000398452 GALNT11Q8NCW6 608 aa12.5□□□□□ -0.41
SKA1-202ENST00000398452 GJC3Q8NFK1 279 aa12.5□□□□□ -0.41
SKA1-202ENST00000398452 HAVCR2Q8TDQ0 301 aa12.5□□□□□ -0.41
SKA1-202ENST00000398452 SGCDQ92629 289 aa12.5□□□□□ -0.41
SKA1-202ENST00000398452 STARD4Q96DR4 205 aa12.5□□□□□ -0.41
SKA1-202ENST00000398452 LRRC46Q96FV0 321 aa12.5□□□□□ -0.41
SKA1-202ENST00000398452 MRPL22Q9NWU5 206 aaKnown RBP12.5□□□□□ -0.41
SKA1-202ENST00000398452 MEMO1Q9Y316 297 aa12.5□□□□□ -0.41
SKA1-202ENST00000398452 UGT2A1Q9Y4X1 527 aa12.5□□□□□ -0.41
SKA1-202ENST00000398452 SPTBN1Q01082 2364 aaKnown RBP12.5□□□□□ -0.41
SKA1-202ENST00000398452 ICE1Q9Y2F5 2266 aa12.49□□□□□ -0.41
SKA1-202ENST00000398452 A0A1W2PQL4 384 aaPredicted RBP12.49□□□□□ -0.41
SKA1-202ENST00000398452 J3QLW9 94 aa12.49□□□□□ -0.41
SKA1-202ENST00000398452 MSTNO14793 375 aa12.49□□□□□ -0.41
SKA1-202ENST00000398452 TNFSF13O75888 250 aa12.49□□□□□ -0.41
SKA1-202ENST00000398452 SEC14L2O76054 403 aa12.49□□□□□ -0.41
SKA1-202ENST00000398452 TOXO94900 526 aa12.49□□□□□ -0.41
SKA1-202ENST00000398452 CST2P09228 141 aa12.49□□□□□ -0.41
SKA1-202ENST00000398452 HSMCR30P0CW71 290 aa12.49□□□□□ -0.41
SKA1-202ENST00000398452 ZNF19P17023 458 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms