RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 CASP3P42574 277 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 OR1D4P47884 311 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 CCR4P51679 360 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 PGDP52209 483 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 PRKAG1P54619 331 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 DHODHQ02127 395 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 RPL18Q07020 188 aaKnown RBP2.03□□□□□ -2.08
VPS54-202ENST00000354504 SRSF4Q08170 494 aaKnown RBP2.03□□□□□ -2.08
VPS54-202ENST00000354504 TGM3Q08188 693 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 ST3GAL3Q11203 375 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 DNASE1L3Q13609 305 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 DYRK1AQ13627 763 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 CDSNQ15517 529 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 BEAN1Q3B7T3 259 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 KRT80Q6KB66 452 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 ARSKQ6UWY0 536 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 DPY19L2P2Q6ZN68 376 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 SLC36A1Q7Z2H8 476 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 SYS1Q8N2H4 156 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 ADPRHL1Q8NDY3 354 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 SRFBP1Q8NEF9 429 aaKnown RBP2.03□□□□□ -2.08
VPS54-202ENST00000354504 OR11G2Q8NGC1 345 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 RIT1Q92963 219 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 R3HDM4Q96D70 268 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 SCMH1Q96GD3 660 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 ARL5BQ96KC2 179 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 Q96M85 177 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 TRAF4Q9BUZ4 470 aaPredicted RBP2.03□□□□□ -2.08
VPS54-202ENST00000354504 HDHD5Q9BXW7 423 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 ROGDIQ9GZN7 287 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 CPNE5Q9HCH3 593 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 ZNF304Q9HCX3 659 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 EQTNQ9NQ60 294 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 ACOXLQ9NUZ1 547 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 PIPOXQ9P0Z9 390 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 WARS2Q9UGM6 360 aaKnown RBP2.03□□□□□ -2.08
VPS54-202ENST00000354504 KCNK7Q9Y2U2 307 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 TPRKBQ9Y3C4 175 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 DYSFO75923 2080 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 TMEM272A0A1B0GTI8 110 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 A0A1W2PRG6 482 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 MEIOCA2RUB1 952 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 ISPDA4D126 451 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 SDC3O75056 442 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 GMNNO75496 209 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 PAHP00439 452 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 PLATP00750 562 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 CFIP05156 583 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 ISG15P05161 165 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 YES1P07947 543 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 MELTFP08582 738 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 IL7P13232 177 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 PTBP1P26599 531 aaKnown RBP eCLIP2.03□□□□□ -2.085e-14■■■■□ 20.8
VPS54-202ENST00000354504 SLC9A3P48764 834 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 SMSP52788 366 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 EFNB2P52799 333 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 PNLIPRP2P54317 469 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 LSM3P62310 102 aaKnown RBP2.03□□□□□ -2.08
VPS54-202ENST00000354504 KHDRBS1Q07666 443 aaKnown RBP eCLIP2.03□□□□□ -2.08
VPS54-202ENST00000354504 ATP1A4Q13733 1029 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 C2orf68Q2NKX9 166 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 CLEC12AQ5QGZ9 265 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 PLBD1Q6P4A8 553 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 PLEKHM3Q6ZWE6 761 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 ZNF627Q7L945 461 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 MDGA2Q7Z553 956 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 OAFQ86UD1 273 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 MARCH3Q86UD3 253 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 CATSPERDQ86XM0 798 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 LDLRAD3Q86YD5 345 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 CROCCP3Q8IVE0 287 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 ZFP41Q8N8Y5 198 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 SLC26A10Q8NG04 563 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 OR2M3Q8NG83 312 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 OR11H4Q8NGC9 324 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 RFKQ969G6 155 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 TMEM54Q969K7 222 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 EFHD2Q96C19 240 aaPredicted RBP2.03□□□□□ -2.08
VPS54-202ENST00000354504 PPP1R14BQ96C90 147 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 CHCHD6Q9BRQ6 235 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 FAIM2Q9BWQ8 316 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 C1QTNF7Q9BXJ2 289 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 NUAK2Q9H093 628 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 C1orf198Q9H425 327 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 WDR54Q9H977 334 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 CHODLQ9H9P2 273 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 ABCB9Q9NP78 766 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 ZNF275Q9NSD4 429 aaPredicted RBP2.03□□□□□ -2.08
VPS54-202ENST00000354504 CLN6Q9NWW5 311 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 TVP23BQ9NYZ1 205 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 NPAP1Q9NZP6 1156 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 PISDQ9UG56 409 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 FBXL2Q9UKC9 423 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 SLC35A3Q9Y2D2 325 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 HS3ST3B1Q9Y662 390 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 LHFPL6Q9Y693 200 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 MAU2Q9Y6X3 613 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 SHANK1Q9Y566 2161 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 TNFSF12-TNFSF13A0A0A6YY99 330 aa2.03□□□□□ -2.09
VPS54-202ENST00000354504 IGKV1-9A0A0C4DH69 117 aa2.03□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms