RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 GLS2Q9UI32 602 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 SLC17A4Q9Y2C5 497 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 OR5K3A6NET4 321 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 NPIPA2E9PIF3 369 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 NPIPA3F8WFD2 350 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 ICOSLGO75144 302 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 PMS2P2O95744 297 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 IGF2P01344 180 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 OMGP23515 440 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 BDKRB2P30411 391 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 CTHP32929 405 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 SLC6A8P48029 635 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 TFF2Q03403 129 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 SLC35D3Q5M8T2 416 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 STK35Q8TDR2 534 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 HOXB13Q92826 284 aaPredicted RBP11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 RAB3CQ96E17 227 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 ZC3HAV1LQ96H79 300 aaKnown RBP11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 SORCS2Q96PQ0 1159 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 ZNF160Q9HCG1 818 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 PLEK2Q9NYT0 353 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 B9D1Q9UPM9 204 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 FOXJ3Q9UPW0 622 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 ANKRD36A6QL64 1941 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 MCRIP1C9JLW8 97 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 KCNAB3O43448 404 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 RECKO95980 971 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 GNB3P16520 340 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 CD53P19397 219 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 ZNF93P35789 620 aaPredicted RBP11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 CSNK1EP49674 416 aaKnown RBP11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 SLC26A5P58743 744 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 MEF2DQ14814 521 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 PRTGQ2VWP7 1150 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 SEZ6L2Q6UXD5 910 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 PHYHIPQ92561 330 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 PLA2G2FQ9BZM2 168 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 SLC5A7Q9GZV3 580 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 CHST6Q9GZX3 395 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 ZNF304Q9HCX3 659 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 TRAV8-7A0A075B6U6 113 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 SNAPC5O75971 98 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 MPZL1O95297 269 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 EPPINO95925 133 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 SNTB1Q13884 538 aaKnown RBP11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 PWWP2BQ6NUJ5 590 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 FJX1Q86VR8 437 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 ESX1Q8N693 406 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 MARCH1Q8TCQ1 289 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 MRGPRX1Q96LB2 322 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 DNAJB12Q9NXW2 375 aaKnown RBP11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 HIF3AQ9Y2N7 669 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 CSAG2Q9Y5P2 127 aa11.28□□□□□ -0.6
SNRNP48-201ENST00000342415 C1orf196B1AJZ1 125 aa11.27□□□□□ -0.6
SNRNP48-201ENST00000342415 LPLP06858 475 aa11.27□□□□□ -0.6
SNRNP48-201ENST00000342415 BLVRBP30043 206 aaPredicted RBP11.27□□□□□ -0.6
SNRNP48-201ENST00000342415 CYCSP99999 105 aaKnown RBP11.27□□□□□ -0.6
SNRNP48-201ENST00000342415 RAB30Q15771 203 aa11.27□□□□□ -0.6
SNRNP48-201ENST00000342415 WDR38Q5JTN6 314 aa11.27□□□□□ -0.6
SNRNP48-201ENST00000342415 FAM109BQ6ICB4 259 aaPredicted RBP11.27□□□□□ -0.6
SNRNP48-201ENST00000342415 CHRDL2Q6WN34 429 aa11.27□□□□□ -0.6
SNRNP48-201ENST00000342415 ETFBKMTQ8IXQ9 262 aa11.27□□□□□ -0.6
SNRNP48-201ENST00000342415 ZNF565Q8N9K5 539 aa11.27□□□□□ -0.6
SNRNP48-201ENST00000342415 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.27□□□□□ -0.6
SNRNP48-201ENST00000342415 FBXW5Q969U6 566 aa11.27□□□□□ -0.6
SNRNP48-201ENST00000342415 MARC2Q969Z3 335 aa11.27□□□□□ -0.6
SNRNP48-201ENST00000342415 ZNF75AQ96N20 296 aa11.27□□□□□ -0.6
SNRNP48-201ENST00000342415 TMEM59Q9BXS4 323 aa11.27□□□□□ -0.6
SNRNP48-201ENST00000342415 ATPIF1Q9UII2 106 aa11.27□□□□□ -0.6
SNRNP48-201ENST00000342415 CD207Q9UJ71 328 aa11.27□□□□□ -0.6
SNRNP48-201ENST00000342415 A0A087WUJ7 227 aa11.27□□□□□ -0.61
SNRNP48-201ENST00000342415 SHISA8B8ZZ34 492 aa11.27□□□□□ -0.61
SNRNP48-201ENST00000342415 NDUFB6O95139 128 aa11.27□□□□□ -0.61
SNRNP48-201ENST00000342415 TUBG1P23258 451 aa11.27□□□□□ -0.61
SNRNP48-201ENST00000342415 GLP1RP43220 463 aa11.27□□□□□ -0.61
SNRNP48-201ENST00000342415 ZIC1Q15915 447 aa11.27□□□□□ -0.61
SNRNP48-201ENST00000342415 C1orf140Q5VVS0 124 aa11.27□□□□□ -0.61
SNRNP48-201ENST00000342415 ARIH2OSQ8N7S6 290 aa11.27□□□□□ -0.61
SNRNP48-201ENST00000342415 OR4D10Q8NGI6 311 aa11.27□□□□□ -0.61
SNRNP48-201ENST00000342415 ZNF707Q96C28 371 aaPredicted RBP11.27□□□□□ -0.61
SNRNP48-201ENST00000342415 SLC25A21Q9BQT8 299 aaPredicted RBP11.27□□□□□ -0.61
SNRNP48-201ENST00000342415 SEMA6CQ9H3T2 930 aa11.27□□□□□ -0.61
SNRNP48-201ENST00000342415 TRAV36DV7A0A075B6V5 113 aa11.27□□□□□ -0.61
SNRNP48-201ENST00000342415 HSPA12AO43301 675 aa11.27□□□□□ -0.61
SNRNP48-201ENST00000342415 CBX7O95931 251 aa11.27□□□□□ -0.61
SNRNP48-201ENST00000342415 HRH1P35367 487 aa11.27□□□□□ -0.61
SNRNP48-201ENST00000342415 SERPINF1P36955 418 aa11.27□□□□□ -0.61
SNRNP48-201ENST00000342415 NANOS3P60323 173 aaKnown RBP11.27□□□□□ -0.61
SNRNP48-201ENST00000342415 FAM53BQ14153 422 aa11.27□□□□□ -0.61
SNRNP48-201ENST00000342415 PRICKLE4Q2TBC4 344 aa11.27□□□□□ -0.61
SNRNP48-201ENST00000342415 TMEM176BQ3YBM2 270 aaPredicted RBP11.27□□□□□ -0.61
SNRNP48-201ENST00000342415 EXOSC6Q5RKV6 272 aaKnown RBP11.27□□□□□ -0.61
SNRNP48-201ENST00000342415 SLC25A30Q5SVS4 291 aa11.27□□□□□ -0.61
SNRNP48-201ENST00000342415 GLIPR1L1Q6UWM5 242 aa11.27□□□□□ -0.61
SNRNP48-201ENST00000342415 ADGRE4PQ86SQ3 457 aa11.27□□□□□ -0.61
SNRNP48-201ENST00000342415 NR2C2APQ86WQ0 139 aa11.27□□□□□ -0.61
SNRNP48-201ENST00000342415 PRSS27Q9BQR3 290 aa11.27□□□□□ -0.61
SNRNP48-201ENST00000342415 NKX6-2Q9C056 277 aaPredicted RBP11.27□□□□□ -0.61
SNRNP48-201ENST00000342415 DTX4Q9Y2E6 619 aa11.27□□□□□ -0.61
SNRNP48-201ENST00000342415 BORCS7-ASMTA0A0B4J1R7 106 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms