RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 RAB1BQ9H0U4 201 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 PET100P0DJ07 73 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 RAB1AP62820 205 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 MRPS10P82664 201 aaKnown RBP9.14□□□□□ -0.95
USP54-201ENST00000339859 ZMYND11Q15326 602 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 UBE2NLQ5JXB2 153 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 FGGYQ96C11 551 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 REV1Q9UBZ9 1251 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 GDF2Q9UK05 429 aaPredicted RBP9.14□□□□□ -0.95
USP54-201ENST00000339859 ZNF221Q9UK13 617 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 HS3ST3B1Q9Y662 390 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 COL4A6Q14031 1691 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 PLXNA3P51805 1871 aa9.14□□□□□ -0.95
USP54-201ENST00000339859 RNF212BA8MTL3 300 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 H7C417 338 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 NGFRP08138 427 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 CMPK2Q5EBM0 449 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 USP51Q70EK9 711 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 KCTD9Q7L273 389 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 KCNG3Q8TAE7 436 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 COL25A1Q9BXS0 654 aaPredicted RBP9.13□□□□□ -0.95
USP54-201ENST00000339859 PSORS1C1Q9UIG5 152 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 CES1P1Q9UKY3 287 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 TMEM8BA6NDV4 472 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 AHRRA9YTQ3 701 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 DNPH1O43598 174 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 PRICKLE3O43900 615 aaPredicted RBP9.13□□□□□ -0.95
USP54-201ENST00000339859 SLC34A2O95436 690 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 EDN3P14138 238 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 RAB12Q6IQ22 244 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 FAM198BQ6UWH4 519 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 NUFIP2Q7Z417 695 aaKnown RBP9.13□□□□□ -0.95
USP54-201ENST00000339859 OR1F12Q8NHA8 337 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 DCLRE1CQ96SD1 692 aaKnown RBP9.13□□□□□ -0.95
USP54-201ENST00000339859 CMSS1Q9BQ75 279 aaKnown RBP9.13□□□□□ -0.95
USP54-201ENST00000339859 ANGPTL4Q9BY76 406 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 RAXQ9Y2V3 346 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 GMEB1Q9Y692 573 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 GABRPO00591 440 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 ZDHHC23Q8IYP9 409 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 ZNF441Q8N8Z8 693 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 BHLHE23Q8NDY6 225 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 B9D1Q9UPM9 204 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 ABCD4O14678 606 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 DEGS1O15121 323 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 GNAO1P09471 354 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 CSF1P09603 554 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 HTR2CP28335 458 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 LYPD8Q6UX82 237 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 RBMS3Q6XE24 437 aaKnown RBP9.13□□□□□ -0.95
USP54-201ENST00000339859 SLC30A7Q8NEW0 376 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 FUNDC2Q9BWH2 189 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 ZNF385DQ9H6B1 395 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 FBXO34Q9NWN3 711 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 A4GNTQ9UNA3 340 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 R4GMQ9 66 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 CBFA2T3O75081 653 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 ZNF133P52736 654 aaPredicted RBP9.13□□□□□ -0.95
USP54-201ENST00000339859 FXYD6P3P58550 94 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 PHC1P78364 1004 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 GALEQ14376 348 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 NDUFA5Q16718 116 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 EXOSC6Q5RKV6 272 aaKnown RBP9.13□□□□□ -0.95
USP54-201ENST00000339859 CHPT1Q8WUD6 406 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 PHOX2BQ99453 314 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 BARHL1Q9BZE3 327 aa9.13□□□□□ -0.95
USP54-201ENST00000339859 ERRFI1Q9UJM3 462 aaPredicted RBP9.13□□□□□ -0.95
USP54-201ENST00000339859 PLPP3O14495 311 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 SPINT2O43291 252 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 NME2P1O60361 137 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 NDUFB7P17568 137 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 NME2P22392 152 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 PCOLCEQ15113 449 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 INO80EQ8NBZ0 244 aaPredicted RBP9.12□□□□□ -0.95
USP54-201ENST00000339859 TMEM52Q8NDY8 209 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 RRNAD1Q96FB5 475 aaKnown RBP9.12□□□□□ -0.95
USP54-201ENST00000339859 TMEM59Q9BXS4 323 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 ATG2BQ96BY7 2078 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 SLC2A10O95528 541 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 EDDM3BP56851 147 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 RPP30P78346 268 aaKnown RBP9.12□□□□□ -0.95
USP54-201ENST00000339859 LTBQ06643 244 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 PMPCAQ10713 525 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 CCDC58Q4VC31 144 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 TMPRSS11FQ6ZWK6 438 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 COQ8AQ8NI60 647 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 THAP6Q8TBB0 222 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 TRIM63Q969Q1 353 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 TMIGD2Q96BF3 282 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 ARSGQ96EG1 525 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 DUS3LQ96G46 650 aaKnown RBP9.12□□□□□ -0.95
USP54-201ENST00000339859 UBTD1Q9HAC8 227 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 B3GNT2Q9NY97 397 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 GOLGA4Q13439 2230 aaKnown RBP9.12□□□□□ -0.95
USP54-201ENST00000339859 C13orf42A0A1B0GVH6 325 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 HRKO00198 91 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 SH2D1BO14796 132 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 SULT1C4O75897 302 aa9.12□□□□□ -0.95
USP54-201ENST00000339859 OR7C1O76099 320 aaPredicted RBP9.12□□□□□ -0.95
USP54-201ENST00000339859 PAHP00439 452 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms