RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 ZDHHC16Q969W1 377 aa11.57□□□□□ -0.56
SDC3-201ENST00000336798 SLC23A1Q9UHI7 598 aa11.57□□□□□ -0.56
SDC3-201ENST00000336798 LOC100289279A0A1B0GTE1 492 aa11.57□□□□□ -0.56
SDC3-201ENST00000336798 QDPRP09417 244 aa11.57□□□□□ -0.56
SDC3-201ENST00000336798 PLK5Q496M5 336 aa11.57□□□□□ -0.56
SDC3-201ENST00000336798 RDH5Q92781 318 aa11.57□□□□□ -0.56
SDC3-201ENST00000336798 ADAM29Q9UKF5 820 aa11.57□□□□□ -0.56
SDC3-201ENST00000336798 PSMB1P20618 241 aaKnown RBP11.56□□□□□ -0.56
SDC3-201ENST00000336798 CNR1P21554 472 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 GLRA1P23415 457 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 CSNK1G2P78368 415 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 TBCEQ15813 527 aaPredicted RBP11.56□□□□□ -0.56
SDC3-201ENST00000336798 USP51Q70EK9 711 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 H1FNTQ75WM6 255 aaPredicted RBP11.56□□□□□ -0.56
SDC3-201ENST00000336798 ZNF454Q8N9F8 522 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 PXT1Q8NFP0 134 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 OR51F2Q8NH61 342 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 DPF1Q92782 380 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 SLC35A4Q96G79 324 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 MED9Q9NWA0 146 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 CTSFQ9UBX1 484 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 HBE1P02100 147 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 ALPLP05186 524 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 SLC35E2P0CK97 266 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 IAPPP10997 89 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 RPS16P62249 146 aaKnown RBP11.56□□□□□ -0.56
SDC3-201ENST00000336798 FAM74A1Q5RGS3 127 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 RHOUQ7L0Q8 258 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 CADM3Q8N126 398 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 UBE2FQ969M7 185 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 KCNG2Q9UJ96 466 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 SPEF2Q9C093 1822 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 M0R082 166 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 EIF1P41567 113 aaKnown RBP11.56□□□□□ -0.56
SDC3-201ENST00000336798 CSN1S1P47710 185 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 EXT1Q16394 746 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 SPANXN5Q5MJ07 72 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 NXNL2Q5VZ03 156 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 ADGRE4PQ86SQ3 457 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 RPS19BP1Q86WX3 136 aaKnown RBP11.56□□□□□ -0.56
SDC3-201ENST00000336798 CNTN4Q8IWV2 1026 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 SLC35E1Q96K37 410 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 ACOXLQ9NUZ1 547 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 OR51B4Q9Y5P0 310 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 LOC102724200A0A096LPH7 203 aaPredicted RBP11.56□□□□□ -0.56
SDC3-201ENST00000336798 SH2D7A6NKC9 451 aaPredicted RBP11.56□□□□□ -0.56
SDC3-201ENST00000336798 TMEM189-UBE2V1I3L0A0 370 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 TOX4O94842 621 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 TNFSF15O95150 251 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 CLEC12BQ2HXU8 276 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 SOHLH1Q5JUK2 328 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 SLC48A1Q6P1K1 146 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 ADAMTSL4Q6UY14 1074 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 HDAC8Q9BY41 377 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 PLEKHF2Q9H8W4 249 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 CSNK1G1Q9HCP0 422 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 ISYNA1Q9NPH2 558 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 USP3Q9Y6I4 520 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 ARPC3O15145 178 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 SOX15O60248 233 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 HLA-HP01893 362 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 NTF3P20783 257 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 SHHQ15465 462 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 CD300LGQ6UXG3 332 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 CLEC9AQ6UXN8 241 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 MAML2Q8IZL2 1156 aaPredicted RBP11.56□□□□□ -0.56
SDC3-201ENST00000336798 OR51S1Q8NGJ8 323 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 TXLNGYQ9BZA5 131 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 ARRDC1-AS1Q9H2J1 176 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 EXO1Q9UQ84 846 aaKnown RBP11.56□□□□□ -0.56
SDC3-201ENST00000336798 NALCNQ8IZF0 1738 aa11.56□□□□□ -0.56
SDC3-201ENST00000336798 CTNSO60931 367 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 ELK1P19419 428 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 HOXC8P31273 242 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 TRNP1Q6NT89 227 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 PAQR9Q6ZVX9 377 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 VN1R2Q8NFZ6 395 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 SLCO4A1Q96BD0 722 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 CHST6Q9GZX3 395 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 PLSCR3Q9NRY6 295 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 SDK1Q7Z5N4 2213 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 H0YIV9 168 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 ANGPTL7O43827 346 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 SSSCA1O60232 199 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 HTR1FP30939 366 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 GPR12P47775 334 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 FCN2Q15485 313 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 HAGHQ16775 308 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 NKAIN4Q8IVV8 208 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 MS4A4AQ96JQ5 239 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 TBC1D29Q9UFV1 150 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 SLCO1B1Q9Y6L6 691 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 MEIKINA0A087WXM9 373 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 GPRIN2O60269 458 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 SLC2A10O95528 541 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 OR10AD1Q8NGE0 317 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 YIPF5Q969M3 257 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 PLPPR2Q96GM1 343 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 ZIC5Q96T25 663 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 MENTQ9BUN1 341 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms