RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP1.18□□□□□ -2.22
LINC00643-201ENST00000334389 SNRNP200O75643 2136 aaKnown RBP1.18□□□□□ -2.22
LINC00643-201ENST00000334389 FSIP2Q5CZC0 6907 aa1.18□□□□□ -2.22
LINC00643-201ENST00000334389 A0A1W2PPE2 198 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 hCG_1642624A0A1W2PR95 340 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 C17orf105B2RV13 164 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 C22orf46C9J442 243 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 ZNF701M0R085 212 aaPredicted RBP1.17□□□□□ -2.22
LINC00643-201ENST00000334389 SDHDO14521 159 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 STX7O15400 261 aaKnown RBP1.17□□□□□ -2.22
LINC00643-201ENST00000334389 NDUFS4O43181 175 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 SSX4O60224 188 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 GGCTO75223 188 aaKnown RBP1.17□□□□□ -2.22
LINC00643-201ENST00000334389 GLCEO94923 617 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 MPZL1O95297 269 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 SLC2A10O95528 541 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 ETHE1O95571 254 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 NR2F6P10588 404 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 GLRA1P23415 457 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 MCM3P25205 808 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 TSPOP30536 169 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 GABRA5P31644 462 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 GRK5P34947 590 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 SEPHS1P49903 392 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 SERPINB9P50453 376 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 PSMD7P51665 324 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 SLC25A1P53007 311 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 GYS2P54840 703 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 EMP1P54849 157 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 TIAL1Q01085 375 aaKnown RBP eCLIP1.17□□□□□ -2.22
LINC00643-201ENST00000334389 OGDHQ02218 1023 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 CEBPZQ03701 1054 aaKnown RBP1.17□□□□□ -2.22
LINC00643-201ENST00000334389 IL18R1Q13478 541 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 SNX1Q13596 522 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 ZNF124Q15973 351 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 SRSF7Q16629 238 aaKnown RBP eCLIP1.17□□□□□ -2.22
LINC00643-201ENST00000334389 ERCC6LQ2NKX8 1250 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 DEFB112Q30KQ8 113 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 C18orf21Q32NC0 220 aaPredicted RBP1.17□□□□□ -2.22
LINC00643-201ENST00000334389 CDONQ4KMG0 1287 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 RPS26P11Q5JNZ5 115 aaPredicted RBP1.17□□□□□ -2.22
LINC00643-201ENST00000334389 NHLRC3Q5JS37 347 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 SLX4IPQ5VYV7 408 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 FBXW10Q5XX13 1052 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 FAM180BQ6P0A1 224 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 LANCL3Q6ZV70 420 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 SPATA24Q86W54 205 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 CCDC50Q8IVM0 306 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 GRAMD1CQ8IYS0 662 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 AQP11Q8NBQ7 271 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 OR52E4Q8NGH9 312 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 HAVCR2Q8TDQ0 301 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 C2CD4CQ8TF44 421 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 SNX33Q8WV41 574 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 PTP4A1Q93096 173 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 SLC38A4Q969I6 547 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 LINC01600Q96MT4 127 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 FOXN4Q96NZ1 517 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 MS4A4EQ96PG1 132 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 ECSITQ9BQ95 431 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 ELOVL1Q9BW60 279 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 TLR10Q9BXR5 811 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 HES7Q9BYE0 225 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 KRTAP1-5Q9BYS1 174 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 MS4A7Q9GZW8 240 aaPredicted RBP1.17□□□□□ -2.22
LINC00643-201ENST00000334389 MIXL1Q9H2W2 232 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 FN3KQ9H479 309 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 PIGUQ9H490 435 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 IKZF5Q9H5V7 419 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 CNTD2Q9H8S5 307 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 MARCH7Q9H992 704 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 FOLH1BQ9HBA9 442 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 PALMDQ9NP74 551 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 ZNF224Q9NZL3 707 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 ZIM2Q9NZV7 527 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 KLHL14Q9P2G3 628 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 NAGKQ9UJ70 344 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 PSME2Q9UL46 239 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 MOB4Q9Y3A3 225 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 ANGPTL3Q9Y5C1 460 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 HSPE1-MOB4S4R3N1 261 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 ATMQ13315 3056 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 RNF222A6NCQ9 220 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 LIPT2A6NK58 231 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 FAM159BA6NKW6 160 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 MPTX1A8MV57 137 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 ABCD4O14678 606 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 SMAD7O15105 426 aaKnown RBP1.17□□□□□ -2.22
LINC00643-201ENST00000334389 ZSCAN12O43309 604 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 TBX1O43435 398 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 GRAP2O75791 330 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 GAS8O95995 478 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 IGHV1-46P01743 117 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 HLA-DRB1P01911 266 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 CECR9P0C854 216 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 ZCCHC18P0CG32 403 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 PGAM1P18669 254 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 GNAZP19086 355 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 IL1R2P27930 398 aa1.17□□□□□ -2.22
LINC00643-201ENST00000334389 CALCRP30988 508 aa1.17□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms