RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 TTC19Q6DKK2 380 aaPredicted RBP2.19□□□□□ -2.06
HMGB1-201ENST00000326004 SLC8B1Q6J4K2 584 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 KRTAP5-4Q6L8H1 288 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 TMEM220Q6QAJ8 160 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 ACP7Q6ZNF0 438 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 C19orf35Q6ZS72 473 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 COX15Q7KZN9 410 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 PDCL2Q8N4E4 241 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 FNDC5Q8NAU1 212 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 OR7G2Q8NG99 324 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 OR52H1Q8NGJ2 320 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 OR6X1Q8NH79 312 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 ACMSDQ8TDX5 336 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 RDH5Q92781 318 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 SLC38A4Q969I6 547 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 ITFG2Q969R8 447 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 ISG20Q96AZ6 181 aaKnown RBP2.19□□□□□ -2.06
HMGB1-201ENST00000326004 FAM210BQ96KR6 192 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 FCRL1Q96LA6 429 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 OXGR1Q96P68 337 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 PANX2Q96RD6 677 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 TGS1Q96RS0 853 aaKnown RBP2.19□□□□□ -2.06
HMGB1-201ENST00000326004 RIOK1Q9BRS2 568 aaKnown RBP2.19□□□□□ -2.06
HMGB1-201ENST00000326004 C20orf24Q9BUV8 137 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 RIOK2Q9BVS4 552 aaKnown RBP2.19□□□□□ -2.06
HMGB1-201ENST00000326004 SLC25A39Q9BZJ4 359 aaPredicted RBP2.19□□□□□ -2.06
HMGB1-201ENST00000326004 DNTTIP1Q9H147 329 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 PPA2Q9H2U2 334 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 ZNF331Q9NQX6 463 aaPredicted RBP2.19□□□□□ -2.06
HMGB1-201ENST00000326004 PDP1Q9P0J1 537 aaPredicted RBP2.19□□□□□ -2.06
HMGB1-201ENST00000326004 PITPNC1Q9UKF7 332 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 TBC1D24Q9ULP9 559 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 NEU3Q9UQ49 428 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 STARD10Q9Y365 291 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 CACNG2Q9Y698 323 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 EIF3AQ14152 1382 aaKnown RBP2.19□□□□□ -2.06
HMGB1-201ENST00000326004 TOGARAM1Q9Y4F4 1720 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 MYO10Q9HD67 2058 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 MUC3AQ02505 3323 aa2.19□□□□□ -2.06
HMGB1-201ENST00000326004 E9PCH4 1651 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 LAMB2P55268 1798 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 EPG5Q9HCE0 2579 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 ANKRD11Q6UB99 2663 aaPredicted RBP2.18□□□□□ -2.06
HMGB1-201ENST00000326004 UBR3Q6ZT12 1888 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 DOT1LQ8TEK3 1739 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 TRAV25A0A0B4J276 109 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 A0A0G2JN53 185 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 SMCO3A2RU48 225 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 OR5B21A6NL26 309 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 HSD17B6O14756 317 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 OR2F2O95006 317 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 TMEM50AO95807 157 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 OTCP00480 354 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 ABOP16442 354 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 CPN2P22792 545 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 TUBG1P23258 451 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 FMO3P31513 532 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 OTX1P32242 354 aaPredicted RBP2.18□□□□□ -2.06
HMGB1-201ENST00000326004 NAMPTP43490 491 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 RAB9AP51151 201 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 ACLYP53396 1101 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 ERVK-25P63136 954 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 MECOMQ03112 1051 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 DNAJC3Q13217 504 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 PPIL2Q13356 520 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 WDR43Q15061 677 aaKnown RBP eCLIP2.18□□□□□ -2.06
HMGB1-201ENST00000326004 CYTH1Q15438 398 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 TGFBIQ15582 683 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 MRPL23Q16540 153 aaKnown RBP2.18□□□□□ -2.06
HMGB1-201ENST00000326004 HIKESHIQ53FT3 197 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 AGBL2Q5U5Z8 902 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 GPR157Q5UAW9 335 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 AADACL4Q5VUY2 407 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 CTRB2Q6GPI1 263 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 TMEM53Q6P2H8 277 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 C16orf87Q6PH81 154 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 LRRC31Q6UY01 552 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 Q6ZVH6 145 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 RALGPS2Q86X27 583 aaPredicted RBP2.18□□□□□ -2.06
HMGB1-201ENST00000326004 PLA2G4DQ86XP0 818 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 NUDCD3Q8IVD9 361 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 Q8N9L7 120 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 OR4F6Q8NGB9 312 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 FANK1Q8TC84 345 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 SRSF12Q8WXF0 261 aaKnown RBP2.18□□□□□ -2.06
HMGB1-201ENST00000326004 ACOT11Q8WXI4 607 aaPredicted RBP2.18□□□□□ -2.06
HMGB1-201ENST00000326004 NRGNQ92686 78 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 ARPC1AQ92747 370 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 TBRG4Q969Z0 631 aaKnown RBP eCLIP2.18□□□□□ -2.06
HMGB1-201ENST00000326004 ZNF707Q96C28 371 aaPredicted RBP2.18□□□□□ -2.06
HMGB1-201ENST00000326004 PLEKHA8Q96JA3 519 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 IFT74Q96LB3 600 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 OR2M2Q96R28 347 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 CNN2Q99439 309 aaKnown RBP2.18□□□□□ -2.06
HMGB1-201ENST00000326004 TMEM246Q9BRR3 403 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 ACTR6Q9GZN1 396 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 ILKAPQ9H0C8 392 aaPredicted RBP2.18□□□□□ -2.06
HMGB1-201ENST00000326004 GBA3Q9H227 469 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 SIAEQ9HAT2 523 aa2.18□□□□□ -2.06
HMGB1-201ENST00000326004 TUBG2Q9NRH3 451 aa2.18□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms