RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 CAPZBP47756 277 aa11.63□□□□□ -0.55
HMGCS1-201ENST00000325110 MRPS21P82921 87 aaKnown RBP11.63□□□□□ -0.55
HMGCS1-201ENST00000325110 GLO1Q04760 184 aa11.63□□□□□ -0.55
HMGCS1-201ENST00000325110 ELOCQ15369 112 aa11.63□□□□□ -0.55
HMGCS1-201ENST00000325110 GALNTL5Q7Z4T8 443 aa11.63□□□□□ -0.55
HMGCS1-201ENST00000325110 DCXRQ7Z4W1 244 aa11.63□□□□□ -0.55
HMGCS1-201ENST00000325110 FOXRED2Q8IWF2 684 aa11.63□□□□□ -0.55
HMGCS1-201ENST00000325110 GALNT16Q8N428 558 aa11.63□□□□□ -0.55
HMGCS1-201ENST00000325110 ZNF615Q8N8J6 731 aa11.63□□□□□ -0.55
HMGCS1-201ENST00000325110 OR1J2Q8NGS2 313 aa11.63□□□□□ -0.55
HMGCS1-201ENST00000325110 GPER1Q99527 375 aa11.63□□□□□ -0.55
HMGCS1-201ENST00000325110 EMC3Q9P0I2 261 aa11.63□□□□□ -0.55
HMGCS1-201ENST00000325110 PTPRSQ13332 1948 aa11.63□□□□□ -0.55
HMGCS1-201ENST00000325110 C2orf16Q68DN1 1984 aa11.63□□□□□ -0.55
HMGCS1-201ENST00000325110 TRAV36DV7A0A075B6V5 113 aa11.63□□□□□ -0.55
HMGCS1-201ENST00000325110 PRSS37A4D1T9 235 aa11.63□□□□□ -0.55
HMGCS1-201ENST00000325110 F5H0A9 414 aaPredicted RBP11.63□□□□□ -0.55
HMGCS1-201ENST00000325110 SHOXO15266 292 aa11.63□□□□□ -0.55
HMGCS1-201ENST00000325110 ZNF254O75437 659 aa11.63□□□□□ -0.55
HMGCS1-201ENST00000325110 HOXC4P09017 264 aaPredicted RBP11.63□□□□□ -0.55
HMGCS1-201ENST00000325110 PPICP45877 212 aa11.63□□□□□ -0.55
HMGCS1-201ENST00000325110 SLC25A1P53007 311 aa11.63□□□□□ -0.55
HMGCS1-201ENST00000325110 FUT7Q11130 342 aa11.63□□□□□ -0.55
HMGCS1-201ENST00000325110 ANKRD16Q6P6B7 361 aa11.63□□□□□ -0.55
HMGCS1-201ENST00000325110 ZNF679Q8IYX0 411 aa11.63□□□□□ -0.55
HMGCS1-201ENST00000325110 NUDCD2Q8WVJ2 157 aa11.63□□□□□ -0.55
HMGCS1-201ENST00000325110 OR8B4Q96RC9 309 aa11.63□□□□□ -0.55
HMGCS1-201ENST00000325110 PPA2Q9H2U2 334 aa11.63□□□□□ -0.55
HMGCS1-201ENST00000325110 NPDC1Q9NQX5 325 aaPredicted RBP11.63□□□□□ -0.55
HMGCS1-201ENST00000325110 HS3ST3A1Q9Y663 406 aa11.63□□□□□ -0.55
HMGCS1-201ENST00000325110 TMEM272A0A1B0GTI8 110 aa11.62□□□□□ -0.55
HMGCS1-201ENST00000325110 H0YIG0 161 aa11.62□□□□□ -0.55
HMGCS1-201ENST00000325110 WISP1O95388 367 aa11.62□□□□□ -0.55
HMGCS1-201ENST00000325110 HLA-DOBP13765 273 aa11.62□□□□□ -0.55
HMGCS1-201ENST00000325110 LUMP51884 338 aaPredicted RBP11.62□□□□□ -0.55
HMGCS1-201ENST00000325110 RPS4XP62701 263 aaKnown RBP11.62□□□□□ -0.55
HMGCS1-201ENST00000325110 AKIRIN2Q53H80 203 aa11.62□□□□□ -0.55
HMGCS1-201ENST00000325110 EEF1A1P5Q5VTE0 462 aa11.62□□□□□ -0.55
HMGCS1-201ENST00000325110 OR52W1Q6IF63 320 aa11.62□□□□□ -0.55
HMGCS1-201ENST00000325110 C3orf33Q6P1S2 294 aa11.62□□□□□ -0.55
HMGCS1-201ENST00000325110 KLHL24Q6TFL4 600 aa11.62□□□□□ -0.55
HMGCS1-201ENST00000325110 ARSKQ6UWY0 536 aa11.62□□□□□ -0.55
HMGCS1-201ENST00000325110 OR13C9Q8NGT0 318 aa11.62□□□□□ -0.55
HMGCS1-201ENST00000325110 PTPMT1Q8WUK0 201 aaPredicted RBP11.62□□□□□ -0.55
HMGCS1-201ENST00000325110 ST8SIA4Q92187 359 aa11.62□□□□□ -0.55
HMGCS1-201ENST00000325110 SLC46A1Q96NT5 459 aa11.62□□□□□ -0.55
HMGCS1-201ENST00000325110 HHLA2Q9UM44 414 aa11.62□□□□□ -0.55
HMGCS1-201ENST00000325110 LOC107986453A0A1B0GWG9 222 aa11.62□□□□□ -0.55
HMGCS1-201ENST00000325110 PLSCR5A0PG75 271 aa11.62□□□□□ -0.55
HMGCS1-201ENST00000325110 OR2AT4A6NND4 320 aa11.62□□□□□ -0.55
HMGCS1-201ENST00000325110 SNRPGP15A8MWD9 76 aa11.62□□□□□ -0.55
HMGCS1-201ENST00000325110 WNT11O96014 354 aa11.62□□□□□ -0.55
HMGCS1-201ENST00000325110 OR4E1P0C645 316 aa11.62□□□□□ -0.55
HMGCS1-201ENST00000325110 SLC37A1P57057 533 aa11.62□□□□□ -0.55
HMGCS1-201ENST00000325110 TAS2R19P59542 299 aa11.62□□□□□ -0.55
HMGCS1-201ENST00000325110 RPL27P61353 136 aaKnown RBP11.62□□□□□ -0.55
HMGCS1-201ENST00000325110 TMEM225Q6GV28 225 aa11.62□□□□□ -0.55
HMGCS1-201ENST00000325110 LANCL3Q6ZV70 420 aa11.62□□□□□ -0.55
HMGCS1-201ENST00000325110 NPRL2Q8WTW4 380 aa11.62□□□□□ -0.55
HMGCS1-201ENST00000325110 TMEM41AQ96HV5 264 aa11.62□□□□□ -0.55
HMGCS1-201ENST00000325110 SLC41A2Q96JW4 573 aa11.62□□□□□ -0.55
HMGCS1-201ENST00000325110 PLEKHA1Q9HB21 404 aa11.62□□□□□ -0.55
HMGCS1-201ENST00000325110 RABL2AQ9UBK7 228 aaPredicted RBP11.62□□□□□ -0.55
HMGCS1-201ENST00000325110 RABL2BQ9UNT1 228 aa11.62□□□□□ -0.55
HMGCS1-201ENST00000325110 LRP12Q9Y561 859 aa11.62□□□□□ -0.55
HMGCS1-201ENST00000325110 A0A1B0GW55 424 aa11.61□□□□□ -0.55
HMGCS1-201ENST00000325110 G3V3Q6 166 aa11.61□□□□□ -0.55
HMGCS1-201ENST00000325110 KCNAB3O43448 404 aa11.61□□□□□ -0.55
HMGCS1-201ENST00000325110 LMX1BO60663 402 aa11.61□□□□□ -0.55
HMGCS1-201ENST00000325110 IL33O95760 270 aa11.61□□□□□ -0.55
HMGCS1-201ENST00000325110 RLN2P04090 185 aa11.61□□□□□ -0.55
HMGCS1-201ENST00000325110 ASAH2BP0C7U1 165 aa11.61□□□□□ -0.55
HMGCS1-201ENST00000325110 DUX4L2P0CJ85 424 aa11.61□□□□□ -0.55
HMGCS1-201ENST00000325110 DUX4L3P0CJ86 424 aa11.61□□□□□ -0.55
HMGCS1-201ENST00000325110 DUX4L4P0CJ87 422 aa11.61□□□□□ -0.55
HMGCS1-201ENST00000325110 DUX4L5P0CJ88 424 aa11.61□□□□□ -0.55
HMGCS1-201ENST00000325110 DUX4L6P0CJ89 424 aa11.61□□□□□ -0.55
HMGCS1-201ENST00000325110 DUX4L7P0CJ90 424 aa11.61□□□□□ -0.55
HMGCS1-201ENST00000325110 GIMD1P0DJR0 217 aa11.61□□□□□ -0.55
HMGCS1-201ENST00000325110 FBLP22087 321 aaKnown RBP11.61□□□□□ -0.55
HMGCS1-201ENST00000325110 C1orf140Q5VVS0 124 aa11.61□□□□□ -0.55
HMGCS1-201ENST00000325110 OLFML2AQ68BL7 652 aa11.61□□□□□ -0.55
HMGCS1-201ENST00000325110 PRSS42Q7Z5A4 293 aa11.61□□□□□ -0.55
HMGCS1-201ENST00000325110 BPHLQ86WA6 291 aaPredicted RBP11.61□□□□□ -0.55
HMGCS1-201ENST00000325110 FAM219AQ8IW50 185 aa11.61□□□□□ -0.55
HMGCS1-201ENST00000325110 DAZLQ92904 295 aaKnown RBP11.61□□□□□ -0.55
HMGCS1-201ENST00000325110 FGGYQ96C11 551 aa11.61□□□□□ -0.55
HMGCS1-201ENST00000325110 EVA1AQ9H8M9 152 aa11.61□□□□□ -0.55
HMGCS1-201ENST00000325110 DUX4Q9UBX2 424 aa11.61□□□□□ -0.55
HMGCS1-201ENST00000325110 SLC17A2O00624 439 aa11.61□□□□□ -0.55
HMGCS1-201ENST00000325110 LDOC1O95751 146 aaPredicted RBP11.61□□□□□ -0.55
HMGCS1-201ENST00000325110 IL11P20809 199 aa11.61□□□□□ -0.55
HMGCS1-201ENST00000325110 OR1D5P58170 312 aa11.61□□□□□ -0.55
HMGCS1-201ENST00000325110 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.61□□□□□ -0.55
HMGCS1-201ENST00000325110 UNQ6126/PRO20091Q6UXV3 157 aa11.61□□□□□ -0.55
HMGCS1-201ENST00000325110 GKN2Q86XP6 184 aa11.61□□□□□ -0.55
HMGCS1-201ENST00000325110 SPICQ8N5J4 248 aa11.61□□□□□ -0.55
HMGCS1-201ENST00000325110 OR10K1Q8NGX5 313 aa11.61□□□□□ -0.55
HMGCS1-201ENST00000325110 STK35Q8TDR2 534 aa11.61□□□□□ -0.55
HMGCS1-201ENST00000325110 SCARB1Q8WTV0 552 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms