RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 ZNF836Q6ZNA1 936 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 ZNF620Q6ZNG0 422 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 TMEM182Q6ZP80 229 aaPredicted RBP10.54□□□□□ -0.72
VPS39-201ENST00000318006 FAM57BQ71RH2 274 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 C15orf54Q8N8G6 183 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 OR1J1Q8NGS3 322 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 DAZAP1Q96EP5 407 aaKnown RBP10.54□□□□□ -0.72
VPS39-201ENST00000318006 FGF22Q9HCT0 170 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 TMEFF2Q9UIK5 374 aaPredicted RBP10.54□□□□□ -0.72
VPS39-201ENST00000318006 B3GALT5Q9Y2C3 310 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 MEIKINA0A087WXM9 373 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 TARM1B6A8C7 271 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 SELENOFO60613 162 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 ZNF354AO60765 605 aaPredicted RBP10.54□□□□□ -0.72
VPS39-201ENST00000318006 DDAH2O95865 285 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 IGHG1P01857 330 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 IL5P05113 134 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 THBS3P49746 956 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 MAT1AQ00266 395 aaKnown RBP10.54□□□□□ -0.72
VPS39-201ENST00000318006 COL13A1Q5TAT6 717 aaPredicted RBP10.54□□□□□ -0.72
VPS39-201ENST00000318006 FAAP20Q6NZ36 180 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 SYT9Q86SS6 491 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 NAXDQ8IW45 347 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 ELSPBP1Q96BH3 223 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 ZNF75AQ96N20 296 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 C19orf43Q9BQ61 176 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 ZNF576Q9H609 170 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 IFITM5A6NNB3 132 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 RNF212BA8MTL3 300 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 SCGB2A1O75556 95 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 PEX11BO96011 259 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 SOD1P00441 154 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 THBS1P07996 1170 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 FCGR2AP12318 317 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 CAMK2BQ13554 666 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 MELKQ14680 651 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 OR2T2Q6IF00 324 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 IL34Q6ZMJ4 242 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 NKAIN4Q8IVV8 208 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 PTDSS2Q9BVG9 487 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 AUNIPQ9H7T9 357 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 EMC9Q9Y3B6 208 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 DOCK1Q14185 1865 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 F5P12259 2224 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 ACTL6BO94805 426 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 FCGR2CP31995 323 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 FOLR3P41439 243 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 SNRPEP62304 92 aaKnown RBP10.53□□□□□ -0.72
VPS39-201ENST00000318006 LPAL2Q16609 132 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 PHYHD1Q5SRE7 291 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 GALNT16Q8N428 558 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 CLEC1AQ8NC01 280 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 ARV1Q9H2C2 271 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 KIR3DX1Q9H7L2 352 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 PCDHGA1Q9Y5H4 931 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 CDC14CA4D256 554 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 TNFRSF10CO14798 259 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 BET1O15155 118 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 AADACP22760 399 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 CSNK1EP49674 416 aaKnown RBP10.53□□□□□ -0.72
VPS39-201ENST00000318006 HNF4GQ14541 408 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 FXNQ16595 210 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 AARDQ4LEZ3 155 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 ABHD17BQ5VST6 288 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 PLCXD3Q63HM9 321 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 RPUSD3Q6P087 351 aaKnown RBP10.53□□□□□ -0.72
VPS39-201ENST00000318006 CYHR1Q6ZMK1 362 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 TMPRSS7Q7RTY8 843 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 SYS1Q8N2H4 156 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 ZNF784Q8NCA9 323 aaPredicted RBP10.53□□□□□ -0.72
VPS39-201ENST00000318006 RHBDD1Q8TEB9 315 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 SECTM1Q8WVN6 248 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 RHOFQ9HBH0 211 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 CYSLTR2Q9NS75 346 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 AK3Q9UIJ7 227 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 PTRH2Q9Y3E5 179 aaKnown RBP10.53□□□□□ -0.72
VPS39-201ENST00000318006 HS3ST3A1Q9Y663 406 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 RFPL4AA6NLU0 287 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 RFPL4AL1F8VTS6 287 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 P2RY10O00398 339 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 CYB5BO43169 146 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 ZNF264O43296 627 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 OR7C1O76099 320 aaPredicted RBP10.53□□□□□ -0.72
VPS39-201ENST00000318006 FABP6P51161 128 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 RAG2P55895 527 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 AADACL3Q5VUY0 350 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 LIPNQ5VXI9 398 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 RNLSQ5VYX0 342 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 PPP1R3BQ86XI6 285 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 SPNS2Q8IVW8 549 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 OR13H1Q8NG92 308 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 MSI2Q96DH6 328 aaKnown RBP10.53□□□□□ -0.72
VPS39-201ENST00000318006 SGPP1Q9BX95 441 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 ULBP3Q9BZM4 244 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 CMC2Q9NRP2 79 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 ZBTB32Q9Y2Y4 487 aaPredicted RBP10.53□□□□□ -0.72
VPS39-201ENST00000318006 LOC102725191A0A1B0GVB3 256 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 OR6C68A6NDL8 312 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 LEUTXA8MZ59 168 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 YY2O15391 372 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms