RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 ZNF749O43361 778 aa8.21□□□□□ -1.1
MSH4-201ENST00000263187 SULT1B1O43704 296 aa8.21□□□□□ -1.1
MSH4-201ENST00000263187 OR2A4O95047 310 aa8.21□□□□□ -1.1
MSH4-201ENST00000263187 SLC2A1P11166 492 aa8.21□□□□□ -1.1
MSH4-201ENST00000263187 GABRA1P14867 456 aa8.21□□□□□ -1.1
MSH4-201ENST00000263187 RABIFP47224 123 aa8.21□□□□□ -1.1
MSH4-201ENST00000263187 LUMP51884 338 aaPredicted RBP8.21□□□□□ -1.1
MSH4-201ENST00000263187 PSMD4P55036 377 aaKnown RBP8.21□□□□□ -1.1
MSH4-201ENST00000263187 KIR2DS5Q14953 304 aa8.21□□□□□ -1.1
MSH4-201ENST00000263187 HLA-DQA1Q5Y7H0 255 aa8.21□□□□□ -1.1
MSH4-201ENST00000263187 TMEM225Q6GV28 225 aa8.21□□□□□ -1.1
MSH4-201ENST00000263187 ARSKQ6UWY0 536 aa8.21□□□□□ -1.1
MSH4-201ENST00000263187 LANCL3Q6ZV70 420 aa8.21□□□□□ -1.1
MSH4-201ENST00000263187 TMPRSS9Q7Z410 1059 aa8.21□□□□□ -1.1
MSH4-201ENST00000263187 ARHGEF39Q8N4T4 335 aa8.21□□□□□ -1.1
MSH4-201ENST00000263187 OR13C3Q8NGS6 347 aa8.21□□□□□ -1.1
MSH4-201ENST00000263187 NUDCD2Q8WVJ2 157 aa8.21□□□□□ -1.1
MSH4-201ENST00000263187 FBXW5Q969U6 566 aa8.21□□□□□ -1.1
MSH4-201ENST00000263187 OR2A7Q96R45 310 aa8.21□□□□□ -1.1
MSH4-201ENST00000263187 MSRAQ9UJ68 235 aa8.21□□□□□ -1.1
MSH4-201ENST00000263187 MRTO4Q9UKD2 239 aaKnown RBP8.21□□□□□ -1.1
MSH4-201ENST00000263187 LRP12Q9Y561 859 aa8.21□□□□□ -1.1
MSH4-201ENST00000263187 PHF3Q92576 2039 aaKnown RBP8.21□□□□□ -1.1
MSH4-201ENST00000263187 C13orf42A0A1B0GVH6 325 aa8.21□□□□□ -1.1
MSH4-201ENST00000263187 TMEM150CB9EJG8 249 aa8.21□□□□□ -1.1
MSH4-201ENST00000263187 PRAMEF26H0Y7S4 382 aa8.21□□□□□ -1.1
MSH4-201ENST00000263187 TSPAN9O75954 239 aa8.21□□□□□ -1.1
MSH4-201ENST00000263187 CSF1P09603 554 aa8.21□□□□□ -1.1
MSH4-201ENST00000263187 CPN1P15169 458 aa8.21□□□□□ -1.1
MSH4-201ENST00000263187 AKR1C4P17516 323 aa8.21□□□□□ -1.1
MSH4-201ENST00000263187 SLC25A1P53007 311 aa8.21□□□□□ -1.1
MSH4-201ENST00000263187 PLCXD2Q0VAA5 305 aa8.21□□□□□ -1.1
MSH4-201ENST00000263187 SEH1LQ96EE3 360 aa8.21□□□□□ -1.1
MSH4-201ENST00000263187 KLHDC7BQ96G42 594 aa8.21□□□□□ -1.1
MSH4-201ENST00000263187 RADILQ96JH8 1075 aa8.21□□□□□ -1.1
MSH4-201ENST00000263187 PPA2Q9H2U2 334 aa8.21□□□□□ -1.1
MSH4-201ENST00000263187 EXOSC3Q9NQT5 275 aaKnown RBP8.21□□□□□ -1.1
MSH4-201ENST00000263187 CLEC1BQ9P126 229 aa8.21□□□□□ -1.1
MSH4-201ENST00000263187 PRODH2Q9UF12 536 aa8.21□□□□□ -1.1
MSH4-201ENST00000263187 SESN1Q9Y6P5 492 aa8.21□□□□□ -1.1
MSH4-201ENST00000263187 TRBV5-7A0A0A0MS05 114 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 IGKV1D-43A0A0B4J1Z2 117 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 LOC100289279A0A1B0GTE1 492 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 PRSS37A4D1T9 235 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 HLA-AP01891 365 aaKnown RBP8.2□□□□□ -1.1
MSH4-201ENST00000263187 HTR2CP28335 458 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 IL10RAQ13651 578 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 MANEAQ5SRI9 462 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 DCXRQ7Z4W1 244 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 KCTD20Q7Z5Y7 419 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 COMMD2Q86X83 199 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 BPIFB2Q8N4F0 458 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 OR1S1Q8NH92 325 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 ASB5Q8WWX0 329 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 ST8SIA2Q92186 375 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 PHYHIPQ92561 330 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 MCHR2Q969V1 340 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 ARL5BQ96KC2 179 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 SLC6A7Q99884 636 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 ZNF471Q9BX82 626 aaPredicted RBP8.2□□□□□ -1.1
MSH4-201ENST00000263187 MKL2Q9ULH7 1088 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 ETV7Q9Y603 341 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 SNRPGP15A8MWD9 76 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 NSA2O95478 260 aaKnown RBP8.2□□□□□ -1.1
MSH4-201ENST00000263187 CYB5AP00167 134 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 PI3P19957 117 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 YPEL5P62699 121 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 CXADRP78310 365 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 TAGLNQ01995 201 aaKnown RBP8.2□□□□□ -1.1
MSH4-201ENST00000263187 RASGEF1BQ0VAM2 473 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 OR7A5Q15622 319 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 RSPO4Q2I0M5 234 aaPredicted RBP8.2□□□□□ -1.1
MSH4-201ENST00000263187 SLC18B1Q6NT16 456 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 PDZD9Q8IXQ8 264 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 C12orf45Q8N5I9 185 aaPredicted RBP8.2□□□□□ -1.1
MSH4-201ENST00000263187 CLEC1AQ8NC01 280 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 OR4D6Q8NGJ1 314 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 OR10K1Q8NGX5 313 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 OR6N1Q8NGY5 312 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 HOXB13Q92826 284 aaPredicted RBP8.2□□□□□ -1.1
MSH4-201ENST00000263187 FAM131CQ96AQ9 280 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 FGGYQ96C11 551 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 LCORQ96JN0 433 aaPredicted RBP8.2□□□□□ -1.1
MSH4-201ENST00000263187 OR8B4Q96RC9 309 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 ADAT1Q9BUB4 502 aaKnown RBP8.2□□□□□ -1.1
MSH4-201ENST00000263187 FOXQ1Q9C009 403 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 PTGES2Q9H7Z7 377 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 CKLFQ9UBR5 152 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 IL5P05113 134 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 DCNP07585 359 aaKnown RBP8.2□□□□□ -1.1
MSH4-201ENST00000263187 HOXC4P09017 264 aaPredicted RBP8.2□□□□□ -1.1
MSH4-201ENST00000263187 POU2F2P09086 479 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 C4BPBP20851 252 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 RORAP35398 523 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 STARP49675 285 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 ARL4DP49703 201 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 CAPZA1P52907 286 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 GMFBP60983 142 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 UBXN2BQ14CS0 331 aa8.2□□□□□ -1.1
MSH4-201ENST00000263187 FAM69BQ5VUD6 431 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms