RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 TCRBV5S2A0A599 114 aa17.5■□□□□ 0.39
UPF1-201ENST00000262803 TNFSF12O43508 249 aa17.5■□□□□ 0.39
UPF1-201ENST00000262803 CNR1P21554 472 aa17.5■□□□□ 0.39
UPF1-201ENST00000262803 SHEQ5VZ18 495 aa17.5■□□□□ 0.39
UPF1-201ENST00000262803 EXD3Q8N9H8 876 aa17.5■□□□□ 0.39
UPF1-201ENST00000262803 TTC9Q92623 222 aa17.5■□□□□ 0.39
UPF1-201ENST00000262803 FGGYQ96C11 551 aa17.5■□□□□ 0.39
UPF1-201ENST00000262803 RNF167Q9H6Y7 350 aa17.5■□□□□ 0.39
UPF1-201ENST00000262803 HMGN4O00479 90 aa17.5■□□□□ 0.39
UPF1-201ENST00000262803 NOVA1P51513 510 aaKnown RBP17.5■□□□□ 0.39
UPF1-201ENST00000262803 HES1Q14469 280 aa17.5■□□□□ 0.39
UPF1-201ENST00000262803 HABP2Q14520 560 aaPredicted RBP17.5■□□□□ 0.39
UPF1-201ENST00000262803 ST7LQ8TDW4 575 aa17.5■□□□□ 0.39
UPF1-201ENST00000262803 SLC35B4Q969S0 331 aa17.5■□□□□ 0.39
UPF1-201ENST00000262803 PLK3Q9H4B4 646 aa17.5■□□□□ 0.39
UPF1-201ENST00000262803 DUSP21Q9H596 190 aa17.5■□□□□ 0.39
UPF1-201ENST00000262803 CCDC187A0A096LP49 1063 aa17.5■□□□□ 0.39
UPF1-201ENST00000262803 IDSB3KWA1 339 aa17.5■□□□□ 0.39
UPF1-201ENST00000262803 ZNF385BQ569K4 471 aa17.5■□□□□ 0.39
UPF1-201ENST00000262803 GLIPR1L1Q6UWM5 242 aa17.5■□□□□ 0.39
UPF1-201ENST00000262803 HSD17B8Q92506 261 aa17.5■□□□□ 0.39
UPF1-201ENST00000262803 RASD2Q96D21 266 aa17.5■□□□□ 0.39
UPF1-201ENST00000262803 SEC22AQ96IW7 307 aa17.5■□□□□ 0.39
UPF1-201ENST00000262803 OXGR1Q96P68 337 aa17.5■□□□□ 0.39
UPF1-201ENST00000262803 ELF4Q99607 663 aaPredicted RBP17.5■□□□□ 0.39
UPF1-201ENST00000262803 GABARAPL1Q9H0R8 117 aa17.5■□□□□ 0.39
UPF1-201ENST00000262803 ANKRD36CQ5JPF3 1778 aa17.49■□□□□ 0.39
UPF1-201ENST00000262803 ATP1B1P05026 303 aa17.49■□□□□ 0.39
UPF1-201ENST00000262803 SOWAHCQ53LP3 525 aaPredicted RBP17.49■□□□□ 0.39
UPF1-201ENST00000262803 RNF141Q8WVD5 230 aa17.49■□□□□ 0.39
UPF1-201ENST00000262803 ZNF775Q96BV0 537 aaPredicted RBP17.49■□□□□ 0.39
UPF1-201ENST00000262803 SEH1LQ96EE3 360 aa17.49■□□□□ 0.39
UPF1-201ENST00000262803 LINC00615Q96LM1 132 aaPredicted RBP17.49■□□□□ 0.39
UPF1-201ENST00000262803 SLC6A17Q9H1V8 727 aa17.49■□□□□ 0.39
UPF1-201ENST00000262803 LTB4R2Q9NPC1 389 aa17.49■□□□□ 0.39
UPF1-201ENST00000262803 MAP1BP46821 2468 aaKnown RBP17.49■□□□□ 0.39
UPF1-201ENST00000262803 KIAA0100Q14667 2235 aaKnown RBP17.49■□□□□ 0.39
UPF1-201ENST00000262803 FBXO24O75426 580 aa17.49■□□□□ 0.39
UPF1-201ENST00000262803 SCCPDHQ8NBX0 429 aa17.49■□□□□ 0.39
UPF1-201ENST00000262803 OR52H1Q8NGJ2 320 aa17.49■□□□□ 0.39
UPF1-201ENST00000262803 ITGB4P16144 1822 aa17.49■□□□□ 0.39
UPF1-201ENST00000262803 DDX60LQ5H9U9 1706 aaKnown RBP17.49■□□□□ 0.39
UPF1-201ENST00000262803 CSN1S1P47710 185 aa17.49■□□□□ 0.39
UPF1-201ENST00000262803 CCR6P51684 374 aa17.49■□□□□ 0.39
UPF1-201ENST00000262803 UBE2KP61086 200 aa17.49■□□□□ 0.39
UPF1-201ENST00000262803 TPBGQ13641 420 aa17.49■□□□□ 0.39
UPF1-201ENST00000262803 RTL8BQ17RB0 113 aa17.49■□□□□ 0.39
UPF1-201ENST00000262803 PFN4Q8NHR9 129 aa17.49■□□□□ 0.39
UPF1-201ENST00000262803 PATZ1Q9HBE1 687 aaKnown RBP17.49■□□□□ 0.39
UPF1-201ENST00000262803 TRABD2BA6NFA1 517 aa17.49■□□□□ 0.39
UPF1-201ENST00000262803 LTC4SQ16873 150 aa17.49■□□□□ 0.39
UPF1-201ENST00000262803 TRMT12Q53H54 448 aaKnown RBP17.49■□□□□ 0.39
UPF1-201ENST00000262803 LSRQ86X29 649 aaPredicted RBP17.49■□□□□ 0.39
UPF1-201ENST00000262803 DEFB123Q8N688 67 aa17.49■□□□□ 0.39
UPF1-201ENST00000262803 Q96M85 177 aa17.49■□□□□ 0.39
UPF1-201ENST00000262803 EMC7Q9NPA0 242 aa17.49■□□□□ 0.39
UPF1-201ENST00000262803 EXOSC3Q9NQT5 275 aaKnown RBP17.49■□□□□ 0.39
UPF1-201ENST00000262803 SMCO4Q9NRQ5 59 aa17.49■□□□□ 0.39
UPF1-201ENST00000262803 BTAF1O14981 1849 aa17.48■□□□□ 0.39
UPF1-201ENST00000262803 NUDT19A8MXV4 375 aa17.48■□□□□ 0.39
UPF1-201ENST00000262803 PHF1O43189 567 aaPredicted RBP17.48■□□□□ 0.39
UPF1-201ENST00000262803 DTYMKP23919 212 aa17.48■□□□□ 0.39
UPF1-201ENST00000262803 ETV1P50549 477 aa17.48■□□□□ 0.39
UPF1-201ENST00000262803 FAPQ12884 760 aa17.48■□□□□ 0.39
UPF1-201ENST00000262803 LINC00346Q8IVM7 164 aa17.48■□□□□ 0.39
UPF1-201ENST00000262803 CADM3Q8N126 398 aa17.48■□□□□ 0.39
UPF1-201ENST00000262803 FAM26EQ8N5C1 309 aa17.48■□□□□ 0.39
UPF1-201ENST00000262803 BCORP1Q8N888 145 aa17.48■□□□□ 0.39
UPF1-201ENST00000262803 PCNPQ8WW12 178 aaKnown RBP17.48■□□□□ 0.39
UPF1-201ENST00000262803 SLC25A46Q96AG3 418 aa17.48■□□□□ 0.39
UPF1-201ENST00000262803 MYEOVQ96EZ4 313 aa17.48■□□□□ 0.39
UPF1-201ENST00000262803 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP17.48■□□□□ 0.39
UPF1-201ENST00000262803 CNIH1O95406 144 aa17.48■□□□□ 0.39
UPF1-201ENST00000262803 EGR3Q06889 387 aa17.48■□□□□ 0.39
UPF1-201ENST00000262803 GABARAPL3Q9BY60 117 aa17.48■□□□□ 0.39
UPF1-201ENST00000262803 ATP23Q9Y6H3 246 aa17.48■□□□□ 0.39
UPF1-201ENST00000262803 SLX4Q8IY92 1834 aa17.48■□□□□ 0.39
UPF1-201ENST00000262803 A0A1W2PR48 441 aa17.48■□□□□ 0.39
UPF1-201ENST00000262803 ABCD4O14678 606 aa17.48■□□□□ 0.39
UPF1-201ENST00000262803 FADS1O60427 444 aa17.48■□□□□ 0.39
UPF1-201ENST00000262803 IGFBP1P08833 259 aaPredicted RBP17.48■□□□□ 0.39
UPF1-201ENST00000262803 ANXA7P20073 488 aaKnown RBP17.48■□□□□ 0.39
UPF1-201ENST00000262803 SDHAP31040 664 aa17.48■□□□□ 0.39
UPF1-201ENST00000262803 PPIAP62937 165 aaKnown RBP17.48■□□□□ 0.39
UPF1-201ENST00000262803 FOXB2Q5VYV0 432 aa17.48■□□□□ 0.39
UPF1-201ENST00000262803 H2BFWTQ7Z2G1 175 aa17.48■□□□□ 0.39
UPF1-201ENST00000262803 ZNF75AQ96N20 296 aa17.48■□□□□ 0.39
UPF1-201ENST00000262803 DCLRE1CQ96SD1 692 aaKnown RBP17.48■□□□□ 0.39
UPF1-201ENST00000262803 TEAD3Q99594 435 aa17.48■□□□□ 0.39
UPF1-201ENST00000262803 TMPRSS11DO60235 418 aa17.48■□□□□ 0.39
UPF1-201ENST00000262803 GNB3P16520 340 aa17.48■□□□□ 0.39
UPF1-201ENST00000262803 PSMB3P49720 205 aa17.48■□□□□ 0.39
UPF1-201ENST00000262803 LAMP3Q9UQV4 416 aa17.48■□□□□ 0.39
UPF1-201ENST00000262803 B3GALT5Q9Y2C3 310 aa17.48■□□□□ 0.39
UPF1-201ENST00000262803 EVPLQ92817 2033 aa17.47■□□□□ 0.39
UPF1-201ENST00000262803 FRG2CA6NGY1 282 aa17.47■□□□□ 0.39
UPF1-201ENST00000262803 SELENOFO60613 162 aa17.47■□□□□ 0.39
UPF1-201ENST00000262803 SRMP19623 302 aa17.47■□□□□ 0.39
UPF1-201ENST00000262803 CCR9P51686 369 aa17.47■□□□□ 0.39
UPF1-201ENST00000262803 CYHR1Q6ZMK1 362 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms