RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.31□□□□□ -0.28
PTPRA-201ENST00000216877 CDC40O60508 579 aaKnown RBP eCLIP13.31□□□□□ -0.28
PTPRA-201ENST00000216877 CD14P08571 375 aa13.31□□□□□ -0.28
PTPRA-201ENST00000216877 RNH1P13489 461 aaKnown RBP13.31□□□□□ -0.28
PTPRA-201ENST00000216877 RPL29P47914 159 aaKnown RBP13.31□□□□□ -0.28
PTPRA-201ENST00000216877 SMAD3P84022 425 aaKnown RBP13.31□□□□□ -0.28
PTPRA-201ENST00000216877 ZNF705AQ6ZN79 300 aaPredicted RBP13.31□□□□□ -0.28
PTPRA-201ENST00000216877 OR10AD1Q8NGE0 317 aa13.31□□□□□ -0.28
PTPRA-201ENST00000216877 OR10AC1Q8NH08 325 aa13.31□□□□□ -0.28
PTPRA-201ENST00000216877 ZNF296Q8WUU4 475 aaPredicted RBP13.31□□□□□ -0.28
PTPRA-201ENST00000216877 UBE2E3Q969T4 207 aa13.31□□□□□ -0.28
PTPRA-201ENST00000216877 SUSD3Q96L08 255 aa13.31□□□□□ -0.28
PTPRA-201ENST00000216877 SNX22Q96L94 193 aa13.31□□□□□ -0.28
PTPRA-201ENST00000216877 NMNAT3Q96T66 252 aa13.31□□□□□ -0.28
PTPRA-201ENST00000216877 CNTNAP3Q9BZ76 1288 aa13.31□□□□□ -0.28
PTPRA-201ENST00000216877 MKI67P46013 3256 aaKnown RBP13.31□□□□□ -0.28
PTPRA-201ENST00000216877 CTAG2O75638 210 aa13.31□□□□□ -0.28
PTPRA-201ENST00000216877 CD8AP01732 235 aa13.31□□□□□ -0.28
PTPRA-201ENST00000216877 PDX1P52945 283 aa13.31□□□□□ -0.28
PTPRA-201ENST00000216877 TAS2R38P59533 333 aa13.31□□□□□ -0.28
PTPRA-201ENST00000216877 NANOS3P60323 173 aaKnown RBP13.31□□□□□ -0.28
PTPRA-201ENST00000216877 UBE2KP61086 200 aa13.31□□□□□ -0.28
PTPRA-201ENST00000216877 EIF5AP63241 154 aaKnown RBP13.31□□□□□ -0.28
PTPRA-201ENST00000216877 PRAMEF14Q5SWL7 426 aa13.31□□□□□ -0.28
PTPRA-201ENST00000216877 HIST2H3PS2Q5TEC6 136 aa13.31□□□□□ -0.28
PTPRA-201ENST00000216877 SUMF2Q8NBJ7 301 aa13.31□□□□□ -0.28
PTPRA-201ENST00000216877 ZNF563Q8TA94 476 aa13.31□□□□□ -0.28
PTPRA-201ENST00000216877 OR7D2Q96RA2 312 aa13.31□□□□□ -0.28
PTPRA-201ENST00000216877 SRA1Q9HD15 236 aaKnown RBP13.31□□□□□ -0.28
PTPRA-201ENST00000216877 CHRNA9Q9UGM1 479 aa13.31□□□□□ -0.28
PTPRA-201ENST00000216877 SLC25A13Q9UJS0 675 aa13.31□□□□□ -0.28
PTPRA-201ENST00000216877 H3BNC9 293 aa13.3□□□□□ -0.28
PTPRA-201ENST00000216877 EIF1AYO14602 144 aaKnown RBP13.3□□□□□ -0.28
PTPRA-201ENST00000216877 CRHP06850 196 aa13.3□□□□□ -0.28
PTPRA-201ENST00000216877 CALCBP10092 127 aa13.3□□□□□ -0.28
PTPRA-201ENST00000216877 ADRA2CP18825 462 aa13.3□□□□□ -0.28
PTPRA-201ENST00000216877 CRABP1P29762 137 aa13.3□□□□□ -0.28
PTPRA-201ENST00000216877 EIF1AXP47813 144 aaKnown RBP13.3□□□□□ -0.28
PTPRA-201ENST00000216877 C2orf76Q3KRA6 126 aa13.3□□□□□ -0.28
PTPRA-201ENST00000216877 LPCAT3Q6P1A2 487 aa13.3□□□□□ -0.28
PTPRA-201ENST00000216877 LYG2Q86SG7 212 aa13.3□□□□□ -0.28
PTPRA-201ENST00000216877 SLC30A7Q8NEW0 376 aa13.3□□□□□ -0.28
PTPRA-201ENST00000216877 NUP43Q8NFH3 380 aa13.3□□□□□ -0.28
PTPRA-201ENST00000216877 OR51F2Q8NH61 342 aa13.3□□□□□ -0.28
PTPRA-201ENST00000216877 FAM46BQ96A09 425 aa13.3□□□□□ -0.28
PTPRA-201ENST00000216877 DDA1Q9BW61 102 aa13.3□□□□□ -0.28
PTPRA-201ENST00000216877 TP53TG5Q9Y2B4 290 aa13.3□□□□□ -0.28
PTPRA-201ENST00000216877 CACNA1IQ9P0X4 2223 aa13.3□□□□□ -0.28
PTPRA-201ENST00000216877 C1QL1O75973 258 aa13.3□□□□□ -0.28
PTPRA-201ENST00000216877 ITGA5P08648 1049 aa13.3□□□□□ -0.28
PTPRA-201ENST00000216877 TUBG1P23258 451 aa13.3□□□□□ -0.28
PTPRA-201ENST00000216877 MAP3K8P41279 467 aa13.3□□□□□ -0.28
PTPRA-201ENST00000216877 FOXO1Q12778 655 aa13.3□□□□□ -0.28
PTPRA-201ENST00000216877 DTD2Q96FN9 168 aa13.3□□□□□ -0.28
PTPRA-201ENST00000216877 UTP23Q9BRU9 249 aaKnown RBP13.3□□□□□ -0.28
PTPRA-201ENST00000216877 OR5AC2Q9NZP5 309 aa13.3□□□□□ -0.28
PTPRA-201ENST00000216877 LEFTY2O00292 366 aa13.3□□□□□ -0.28
PTPRA-201ENST00000216877 GPANK1O95872 356 aa13.3□□□□□ -0.28
PTPRA-201ENST00000216877 FAM157CP0CG43 387 aa13.3□□□□□ -0.28
PTPRA-201ENST00000216877 GNALP38405 381 aa13.3□□□□□ -0.28
PTPRA-201ENST00000216877 FHITP49789 147 aa13.3□□□□□ -0.28
PTPRA-201ENST00000216877 VASPP50552 380 aaPredicted RBP13.3□□□□□ -0.28
PTPRA-201ENST00000216877 RNF151Q2KHN1 245 aa13.3□□□□□ -0.28
PTPRA-201ENST00000216877 LANCL3Q6ZV70 420 aa13.3□□□□□ -0.28
PTPRA-201ENST00000216877 SP7Q8TDD2 431 aaPredicted RBP13.3□□□□□ -0.28
PTPRA-201ENST00000216877 CCDC74BQ96LY2 380 aa13.3□□□□□ -0.28
PTPRA-201ENST00000216877 TSSK2Q96PF2 358 aa13.3□□□□□ -0.28
PTPRA-201ENST00000216877 ANKRD10Q9NXR5 420 aa13.3□□□□□ -0.28
PTPRA-201ENST00000216877 REV3LO60673 3130 aa13.29□□□□□ -0.28
PTPRA-201ENST00000216877 SERTM1A2A2V5 107 aa13.29□□□□□ -0.28
PTPRA-201ENST00000216877 J3QRE1 110 aa13.29□□□□□ -0.28
PTPRA-201ENST00000216877 GEMIN2O14893 280 aaKnown RBP13.29□□□□□ -0.28
PTPRA-201ENST00000216877 ZNF749O43361 778 aa13.29□□□□□ -0.28
PTPRA-201ENST00000216877 TGM5O43548 720 aa13.29□□□□□ -0.28
PTPRA-201ENST00000216877 STK17BO94768 372 aa13.29□□□□□ -0.28
PTPRA-201ENST00000216877 WNT11O96014 354 aa13.29□□□□□ -0.28
PTPRA-201ENST00000216877 SERPINA2P20848 420 aa13.29□□□□□ -0.28
PTPRA-201ENST00000216877 ADAD2Q8NCV1 583 aaKnown RBP13.29□□□□□ -0.28
PTPRA-201ENST00000216877 FAM3DQ96BQ1 224 aa13.29□□□□□ -0.28
PTPRA-201ENST00000216877 EGLN1Q9GZT9 426 aa13.29□□□□□ -0.28
PTPRA-201ENST00000216877 ZNF700Q9H0M5 742 aa13.29□□□□□ -0.28
PTPRA-201ENST00000216877 VSIG4Q9Y279 399 aa13.29□□□□□ -0.28
PTPRA-201ENST00000216877 MARCH11A6NNE9 402 aa13.29□□□□□ -0.28
PTPRA-201ENST00000216877 FOXE1O00358 373 aaPredicted RBP13.29□□□□□ -0.28
PTPRA-201ENST00000216877 OGG1O15527 345 aa13.29□□□□□ -0.28
PTPRA-201ENST00000216877 RDH16O75452 317 aa13.29□□□□□ -0.28
PTPRA-201ENST00000216877 LRG1P02750 347 aa13.29□□□□□ -0.28
PTPRA-201ENST00000216877 OR2T7P0C7T2 308 aa13.29□□□□□ -0.28
PTPRA-201ENST00000216877 HIST1H1CP16403 213 aaKnown RBP13.29□□□□□ -0.28
PTPRA-201ENST00000216877 PSMB5P28074 263 aa13.29□□□□□ -0.28
PTPRA-201ENST00000216877 HGFACQ04756 655 aa13.29□□□□□ -0.28
PTPRA-201ENST00000216877 RAB11BQ15907 218 aa13.29□□□□□ -0.28
PTPRA-201ENST00000216877 Q499Y3 187 aa13.29□□□□□ -0.28
PTPRA-201ENST00000216877 TAS1R1Q7RTX1 841 aa13.29□□□□□ -0.28
PTPRA-201ENST00000216877 OR2T27Q8NH04 317 aa13.29□□□□□ -0.28
PTPRA-201ENST00000216877 FGF13Q92913 245 aa13.29□□□□□ -0.28
PTPRA-201ENST00000216877 FOXN4Q96NZ1 517 aa13.29□□□□□ -0.28
PTPRA-201ENST00000216877 CLDND1Q9NY35 253 aa13.29□□□□□ -0.28
PTPRA-201ENST00000216877 CGGBP1Q9UFW8 167 aaPredicted RBP13.29□□□□□ -0.28
PTPRA-201ENST00000216877 F5P12259 2224 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms