RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 TPM3P06753 285 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 IVLP07476 585 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 PABPC4LP0CB38 370 aaKnown RBP1.69□□□□□ -2.14
CD44-239ENST00000639002 OR8G3PP0DMU2 310 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 MCF2P10911 925 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 PAX7P23759 505 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 HSD17B2P37059 387 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 MAP3K8P41279 467 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 UBE2AP49459 152 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 RPS15P62841 145 aaKnown RBP1.69□□□□□ -2.14
CD44-239ENST00000639002 ERVK-25P63136 954 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 IRX3P78415 501 aaPredicted RBP1.69□□□□□ -2.14
CD44-239ENST00000639002 BST1Q10588 318 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 MERTKQ12866 999 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 TRDNQ13061 729 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 ANGPT1Q15389 498 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 Q3ZCU0 254 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 CTSL3PQ5NE16 218 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 PYHIN1Q6K0P9 492 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 NLRP9Q7RTR0 991 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 CDR2LQ86X02 465 aaPredicted RBP1.69□□□□□ -2.14
CD44-239ENST00000639002 VSTM4Q8IW00 320 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 LRRC75A-AS1Q8N1F1 130 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 ACOT4Q8N9L9 421 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 OR4C5Q8NGB2 326 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 SYNPRQ8TBG9 265 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 ZCCHC13Q8WW36 166 aaKnown RBP1.69□□□□□ -2.14
CD44-239ENST00000639002 SGK3Q96BR1 496 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 CMTM7Q96FZ5 175 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 OR10C1Q96KK4 312 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 NPY6RQ99463 290 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 RNF2Q99496 336 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 COPS8Q99627 209 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 ROPN1BQ9BZX4 212 aaPredicted RBP1.69□□□□□ -2.14
CD44-239ENST00000639002 AUNIPQ9H7T9 357 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 NOX3Q9HBY0 568 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 ZNF160Q9HCG1 818 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 MRPL47Q9HD33 250 aaKnown RBP1.69□□□□□ -2.14
CD44-239ENST00000639002 AGPAT3Q9NRZ7 376 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 UFSP2Q9NUQ7 469 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 GCNT4Q9P109 453 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 PEF1Q9UBV8 284 aaKnown RBP1.69□□□□□ -2.14
CD44-239ENST00000639002 OR12D3Q9UGF7 316 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 NOSIPQ9Y314 301 aaKnown RBP1.69□□□□□ -2.14
CD44-239ENST00000639002 TIMM10BQ9Y5J6 103 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 NPTNQ9Y639 398 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 GMEB1Q9Y692 573 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 BZW2Q9Y6E2 419 aaKnown RBP1.69□□□□□ -2.14
CD44-239ENST00000639002 UBR4Q5T4S7 5183 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 NINLQ9Y2I6 1382 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 UNC13AQ9UPW8 1703 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 SHROOM3Q8TF72 1996 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 MN1Q10571 1320 aaPredicted RBP1.68□□□□□ -2.14
CD44-239ENST00000639002 MAP3K19Q56UN5 1328 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 IGKV3D-11A0A0A0MRZ8 115 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 A0A1B0GVX0 72 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 C17orf51A8MQB3 221 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 C12orf71A8MTZ7 269 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 ZNF701M0R085 212 aaPredicted RBP1.68□□□□□ -2.14
CD44-239ENST00000639002 TRDMT1O14717 391 aaKnown RBP1.68□□□□□ -2.14
CD44-239ENST00000639002 CTAG2O75638 210 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 MBP02144 154 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 CAPN1P07384 714 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 STAG3L2P0CL84 134 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 PTNP21246 168 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 CHMLP26374 656 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 CASP14P31944 242 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 RORAP35398 523 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 MAGEA8P43361 318 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 CDKN1BP46527 198 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 OR1G1P47890 313 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 GSSP48637 474 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 BCAP31P51572 246 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 SEC61GP60059 68 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 C1QTNF8P60827 252 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 HMGCS1Q01581 520 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 MAB21L1Q13394 359 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 CHRNA6Q15825 494 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 IGFBP7Q16270 282 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 XKR7Q5GH72 579 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 OR2G6Q5TZ20 316 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 PLCXD3Q63HM9 321 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 LRRC66Q68CR7 880 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 PDPK2PQ6A1A2 396 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 OR4F3Q6IEY1 312 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 RNASEKQ6P5S7 137 aaKnown RBP1.68□□□□□ -2.14
CD44-239ENST00000639002 TMEM107Q6UX40 140 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 PGAP1Q75T13 922 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 NUDCD3Q8IVD9 361 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 KATNAL2Q8IYT4 538 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 OFCC1Q8IZS5 231 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 OR52H1Q8NGJ2 320 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 OR5D13Q8NGL4 314 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 OR1N2Q8NGR9 330 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 LILRB4Q8NHJ6 448 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 LRRC20Q8TCA0 184 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 MITD1Q8WV92 249 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 SLC38A4Q969I6 547 aa1.68□□□□□ -2.14
CD44-239ENST00000639002 CIDECQ96AQ7 238 aaPredicted RBP1.68□□□□□ -2.14
CD44-239ENST00000639002 MSANTD3Q96H12 275 aa1.68□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms