RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 RASGEF1BQ0VAM2 473 aa13.99□□□□□ -0.17
CLN3-251ENST00000636853 SNTA1Q13424 505 aa13.99□□□□□ -0.17
CLN3-251ENST00000636853 TMEM176BQ3YBM2 270 aaPredicted RBP13.99□□□□□ -0.17
CLN3-251ENST00000636853 ZNF468Q5VIY5 522 aaPredicted RBP13.99□□□□□ -0.17
CLN3-251ENST00000636853 TIGD3Q6B0B8 471 aa13.99□□□□□ -0.17
CLN3-251ENST00000636853 ASB18Q6ZVZ8 466 aa13.99□□□□□ -0.17
CLN3-251ENST00000636853 RAB11FIP2Q7L804 512 aa13.99□□□□□ -0.17
CLN3-251ENST00000636853 GPAT4Q86UL3 456 aa13.99□□□□□ -0.17
CLN3-251ENST00000636853 LINC00346Q8IVM7 164 aa13.99□□□□□ -0.17
CLN3-251ENST00000636853 JSRP1Q96MG2 331 aaPredicted RBP13.99□□□□□ -0.17
CLN3-251ENST00000636853 THAP7Q9BT49 309 aaPredicted RBP13.99□□□□□ -0.17
CLN3-251ENST00000636853 PROK2Q9HC23 129 aa13.99□□□□□ -0.17
CLN3-251ENST00000636853 SPATA2Q9UM82 520 aa13.99□□□□□ -0.17
CLN3-251ENST00000636853 V9GY05 133 aa13.99□□□□□ -0.17
CLN3-251ENST00000636853 A0A1W2PNV4 684 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 NPIPB13A6NJU9 1138 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 NPIPB4C9JG80 1138 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 EEF1E1O43324 174 aaKnown RBP13.98□□□□□ -0.17
CLN3-251ENST00000636853 ZNF254O75437 659 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 PRKAR1AP10644 381 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 ADRA2CP18825 462 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 MFGE8Q08431 387 aaPredicted RBP13.98□□□□□ -0.17
CLN3-251ENST00000636853 RNASE12Q5GAN4 147 aaKnown RBP13.98□□□□□ -0.17
CLN3-251ENST00000636853 DNM1P34Q6PK57 102 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 PPP1R32Q7Z5V6 425 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 DNAAF1Q8NEP3 725 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 RNF128Q8TEB7 428 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 TMEM106AQ96A25 262 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 TCFL5Q9UL49 500 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 LRP12Q9Y561 859 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 TRAV8-7A0A075B6U6 113 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 HSPB2A8KAH6 182 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 AIPO00170 330 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 RAMP1O60894 148 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 ADRB1P08588 477 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 MAPK3P27361 379 aaPredicted RBP13.98□□□□□ -0.17
CLN3-251ENST00000636853 HLA-DMAP28067 261 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 P2RY4P51582 365 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 MLF1P58340 268 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 ROM1Q03395 351 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 SF3A2Q15428 464 aaKnown RBP13.98□□□□□ -0.17
CLN3-251ENST00000636853 HSPB2Q16082 182 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 SIGIRRQ6IA17 410 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 PYHIN1Q6K0P9 492 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 MZT2BQ6NZ67 158 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 KCTD18Q6PI47 426 aaPredicted RBP13.98□□□□□ -0.17
CLN3-251ENST00000636853 CORO6Q6QEF8 472 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 C6orf15Q6UXA7 325 aaPredicted RBP13.98□□□□□ -0.17
CLN3-251ENST00000636853 NHLRC1Q6VVB1 395 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 UEVLDQ8IX04 471 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 IZUMO1Q8IYV9 350 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 TCTE3Q8IZS6 198 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 OR52N5Q8NH56 324 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 GPR148Q8TDV2 347 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 CT55Q8WUE5 264 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 RFT1Q96AA3 541 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 ZFP3Q96NJ6 502 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 ANGPTL4Q9BY76 406 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 STRADBQ9C0K7 418 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.98□□□□□ -0.17
CLN3-251ENST00000636853 FANCFQ9NPI8 374 aa13.98□□□□□ -0.17
CLN3-251ENST00000636853 RBFOX1Q9NWB1 397 aaKnown RBP13.98□□□□□ -0.17
CLN3-251ENST00000636853 KHDRBS3O75525 346 aaKnown RBP13.97□□□□□ -0.17
CLN3-251ENST00000636853 MAS1P04201 325 aa13.97□□□□□ -0.17
CLN3-251ENST00000636853 CD59P13987 128 aa13.97□□□□□ -0.17
CLN3-251ENST00000636853 ERP29P30040 261 aaKnown RBP13.97□□□□□ -0.17
CLN3-251ENST00000636853 EIF1P41567 113 aaKnown RBP13.97□□□□□ -0.17
CLN3-251ENST00000636853 RIDAP52758 137 aaKnown RBP13.97□□□□□ -0.17
CLN3-251ENST00000636853 CAMK2DQ13557 499 aa13.97□□□□□ -0.17
CLN3-251ENST00000636853 TEX30Q5JUR7 227 aa13.97□□□□□ -0.17
CLN3-251ENST00000636853 PLA2G2CQ5R387 149 aa13.97□□□□□ -0.17
CLN3-251ENST00000636853 STPG1Q5TH74 334 aa13.97□□□□□ -0.17
CLN3-251ENST00000636853 FDX2Q6P4F2 183 aa13.97□□□□□ -0.17
CLN3-251ENST00000636853 DCXRQ7Z4W1 244 aa13.97□□□□□ -0.17
CLN3-251ENST00000636853 LRRTM1Q86UE6 522 aa13.97□□□□□ -0.17
CLN3-251ENST00000636853 SLITRK2Q9H156 845 aa13.97□□□□□ -0.17
CLN3-251ENST00000636853 LIN7BQ9HAP6 207 aa13.97□□□□□ -0.17
CLN3-251ENST00000636853 HPF1Q9NWY4 346 aa13.97□□□□□ -0.17
CLN3-251ENST00000636853 PAQR5Q9NXK6 330 aaPredicted RBP13.97□□□□□ -0.17
CLN3-251ENST00000636853 NLKQ9UBE8 527 aa13.97□□□□□ -0.17
CLN3-251ENST00000636853 FBXL3Q9UKT7 428 aa13.97□□□□□ -0.17
CLN3-251ENST00000636853 PCDHGA9Q9Y5G4 932 aaKnown RBP13.97□□□□□ -0.17
CLN3-251ENST00000636853 TRBV5-7A0A0A0MS05 114 aa13.97□□□□□ -0.17
CLN3-251ENST00000636853 CDX4O14627 284 aaPredicted RBP13.97□□□□□ -0.17
CLN3-251ENST00000636853 DOK2O60496 412 aa13.97□□□□□ -0.17
CLN3-251ENST00000636853 ZNF432O94892 652 aa13.97□□□□□ -0.17
CLN3-251ENST00000636853 JMJD7P0C870 316 aa13.97□□□□□ -0.17
CLN3-251ENST00000636853 DPP4P27487 766 aa13.97□□□□□ -0.17
CLN3-251ENST00000636853 AVPR2P30518 371 aa13.97□□□□□ -0.17
CLN3-251ENST00000636853 P2RX3P56373 397 aa13.97□□□□□ -0.17
CLN3-251ENST00000636853 Q0VFX4 171 aa13.97□□□□□ -0.17
CLN3-251ENST00000636853 FAM205BPQ63HN1 556 aa13.97□□□□□ -0.17
CLN3-251ENST00000636853 SLC22A10Q63ZE4 541 aa13.97□□□□□ -0.17
CLN3-251ENST00000636853 TMEM225Q6GV28 225 aa13.97□□□□□ -0.17
CLN3-251ENST00000636853 FCRLAQ7L513 359 aa13.97□□□□□ -0.17
CLN3-251ENST00000636853 CMTM4Q8IZR5 234 aa13.97□□□□□ -0.17
CLN3-251ENST00000636853 ZNF454Q8N9F8 522 aa13.97□□□□□ -0.17
CLN3-251ENST00000636853 PAQR8Q8TEZ7 354 aa13.97□□□□□ -0.17
CLN3-251ENST00000636853 TSEN15Q8WW01 171 aaKnown RBP13.97□□□□□ -0.17
CLN3-251ENST00000636853 ZBTB8AQ96BR9 441 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms