RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 SLC27A4Q6P1M0 643 aa15.75■□□□□ 0.11
CLN3-239ENST00000628023 TMEM53Q6P2H8 277 aa15.75■□□□□ 0.11
CLN3-239ENST00000628023 SLC22A25Q6T423 547 aa15.75■□□□□ 0.11
CLN3-239ENST00000628023 DPPA2Q7Z7J5 298 aa15.75■□□□□ 0.11
CLN3-239ENST00000628023 LNX2Q8N448 690 aa15.75■□□□□ 0.11
CLN3-239ENST00000628023 KBTBD8Q8NFY9 601 aa15.75■□□□□ 0.11
CLN3-239ENST00000628023 FOXN4Q96NZ1 517 aa15.75■□□□□ 0.11
CLN3-239ENST00000628023 SNX18Q96RF0 628 aa15.75■□□□□ 0.11
CLN3-239ENST00000628023 NUAK2Q9H093 628 aa15.75■□□□□ 0.11
CLN3-239ENST00000628023 GABARAPL1Q9H0R8 117 aa15.75■□□□□ 0.11
CLN3-239ENST00000628023 FN3KQ9H479 309 aa15.75■□□□□ 0.11
CLN3-239ENST00000628023 SIAEQ9HAT2 523 aa15.75■□□□□ 0.11
CLN3-239ENST00000628023 CCNB1IP1Q9NPC3 277 aa15.75■□□□□ 0.11
CLN3-239ENST00000628023 BEX4Q9NWD9 120 aaPredicted RBP15.75■□□□□ 0.11
CLN3-239ENST00000628023 KLHL21Q9UJP4 597 aa15.75■□□□□ 0.11
CLN3-239ENST00000628023 IGHV1-18A0A0C4DH31 117 aa15.74■□□□□ 0.11
CLN3-239ENST00000628023 MGRN1O60291 552 aa15.74■□□□□ 0.11
CLN3-239ENST00000628023 PLAUP00749 431 aa15.74■□□□□ 0.11
CLN3-239ENST00000628023 PATE4P0C8F1 98 aa15.74■□□□□ 0.11
CLN3-239ENST00000628023 ZNF3P17036 446 aa15.74■□□□□ 0.11
CLN3-239ENST00000628023 MSR1P21757 451 aa15.74■□□□□ 0.11
CLN3-239ENST00000628023 CDH11P55287 796 aa15.74■□□□□ 0.11
CLN3-239ENST00000628023 RAB1AP62820 205 aa15.74■□□□□ 0.11
CLN3-239ENST00000628023 SPOCK1Q08629 439 aa15.74■□□□□ 0.11
CLN3-239ENST00000628023 GINS1Q14691 196 aa15.74■□□□□ 0.11
CLN3-239ENST00000628023 GLB1L2Q8IW92 636 aa15.74■□□□□ 0.11
CLN3-239ENST00000628023 CYB561A3Q8NBI2 242 aa15.74■□□□□ 0.11
CLN3-239ENST00000628023 RADILQ96JH8 1075 aa15.74■□□□□ 0.11
CLN3-239ENST00000628023 TSSK2Q96PF2 358 aa15.74■□□□□ 0.11
CLN3-239ENST00000628023 SRA1Q9HD15 236 aaKnown RBP15.74■□□□□ 0.11
CLN3-239ENST00000628023 ZNF224Q9NZL3 707 aa15.74■□□□□ 0.11
CLN3-239ENST00000628023 COA3Q9Y2R0 106 aaPredicted RBP15.74■□□□□ 0.11
CLN3-239ENST00000628023 FLNAP21333 2647 aaKnown RBP15.74■□□□□ 0.11
CLN3-239ENST00000628023 A0A1W2PPR1 153 aa15.73■□□□□ 0.11
CLN3-239ENST00000628023 BAG2O95816 211 aa15.73■□□□□ 0.11
CLN3-239ENST00000628023 IGKV3-15P01624 115 aa15.73■□□□□ 0.11
CLN3-239ENST00000628023 CELA3BP08861 270 aa15.73■□□□□ 0.11
CLN3-239ENST00000628023 CECR9P0C854 216 aa15.73■□□□□ 0.11
CLN3-239ENST00000628023 IGFBP5P24593 272 aa15.73■□□□□ 0.11
CLN3-239ENST00000628023 LAP3P28838 519 aa15.73■□□□□ 0.11
CLN3-239ENST00000628023 GRK5P34947 590 aa15.73■□□□□ 0.11
CLN3-239ENST00000628023 HSF2Q03933 536 aa15.73■□□□□ 0.11
CLN3-239ENST00000628023 C3orf36Q3SXR2 165 aa15.73■□□□□ 0.11
CLN3-239ENST00000628023 ZSCAN2Q7Z7L9 614 aaPredicted RBP15.73■□□□□ 0.11
CLN3-239ENST00000628023 PARP8Q8N3A8 854 aa15.73■□□□□ 0.11
CLN3-239ENST00000628023 FAM169BQ8N8A8 192 aa15.73■□□□□ 0.11
CLN3-239ENST00000628023 SLC37A3Q8NCC5 494 aa15.73■□□□□ 0.11
CLN3-239ENST00000628023 AKAP1Q92667 903 aaKnown RBP eCLIP15.73■□□□□ 0.11
CLN3-239ENST00000628023 NABP1Q96AH0 204 aa15.73■□□□□ 0.11
CLN3-239ENST00000628023 TMEM204Q9BSN7 226 aa15.73■□□□□ 0.11
CLN3-239ENST00000628023 NOX3Q9HBY0 568 aa15.73■□□□□ 0.11
CLN3-239ENST00000628023 EMC7Q9NPA0 242 aa15.73■□□□□ 0.11
CLN3-239ENST00000628023 POLE4Q9NR33 117 aa15.73■□□□□ 0.11
CLN3-239ENST00000628023 DLL4Q9NR61 685 aa15.73■□□□□ 0.11
CLN3-239ENST00000628023 B3GNT2Q9NY97 397 aa15.73■□□□□ 0.11
CLN3-239ENST00000628023 CRNNQ9UBG3 495 aaPredicted RBP15.73■□□□□ 0.11
CLN3-239ENST00000628023 ENOPH1Q9UHY7 261 aa15.73■□□□□ 0.11
CLN3-239ENST00000628023 FBXL3Q9UKT7 428 aa15.73■□□□□ 0.11
CLN3-239ENST00000628023 POLR1DQ9Y2S0 133 aa15.73■□□□□ 0.11
CLN3-239ENST00000628023 OR6C68A6NDL8 312 aa15.72■□□□□ 0.11
CLN3-239ENST00000628023 IGLV1-44P01699 117 aa15.72■□□□□ 0.11
CLN3-239ENST00000628023 CRYAAP02489 173 aa15.72■□□□□ 0.11
CLN3-239ENST00000628023 PLP2Q04941 152 aa15.72■□□□□ 0.11
CLN3-239ENST00000628023 CRMP1Q14194 572 aa15.72■□□□□ 0.11
CLN3-239ENST00000628023 FAM27BQ5VT28 67 aa15.72■□□□□ 0.11
CLN3-239ENST00000628023 SHEQ5VZ18 495 aa15.72■□□□□ 0.11
CLN3-239ENST00000628023 FOXL2NBQ6ZUU3 175 aa15.72■□□□□ 0.11
CLN3-239ENST00000628023 BIVMQ86UB2 503 aa15.72■□□□□ 0.11
CLN3-239ENST00000628023 PQLC1Q8N2U9 271 aa15.72■□□□□ 0.11
CLN3-239ENST00000628023 NPEPL1Q8NDH3 523 aa15.72■□□□□ 0.11
CLN3-239ENST00000628023 PROKR2Q8NFJ6 384 aa15.72■□□□□ 0.11
CLN3-239ENST00000628023 FGFBP3Q8TAT2 258 aa15.72■□□□□ 0.11
CLN3-239ENST00000628023 OTULINQ96BN8 352 aa15.72■□□□□ 0.11
CLN3-239ENST00000628023 PLEKHA8Q96JA3 519 aa15.72■□□□□ 0.11
CLN3-239ENST00000628023 RBM4BQ9BQ04 359 aaKnown RBP15.72■□□□□ 0.11
CLN3-239ENST00000628023 RBM4Q9BWF3 364 aaKnown RBP15.72■□□□□ 0.11
CLN3-239ENST00000628023 RACGAP1Q9H0H5 632 aa15.72■□□□□ 0.11
CLN3-239ENST00000628023 ORC6Q9Y5N6 252 aa15.72■□□□□ 0.11
CLN3-239ENST00000628023 FKBP7Q9Y680 259 aa15.72■□□□□ 0.11
CLN3-239ENST00000628023 CADP27708 2225 aa15.72■□□□□ 0.11
CLN3-239ENST00000628023 C12orf71A8MTZ7 269 aa15.71■□□□□ 0.11
CLN3-239ENST00000628023 FAM171A2A8MVW0 826 aa15.71■□□□□ 0.11
CLN3-239ENST00000628023 ATP6V1G2-DDX39BF2Z307 99 aa15.71■□□□□ 0.11
CLN3-239ENST00000628023 DCTN6O00399 190 aa15.71■□□□□ 0.11
CLN3-239ENST00000628023 HS3ST1O14792 307 aa15.71■□□□□ 0.11
CLN3-239ENST00000628023 MITFO75030 526 aaPredicted RBP15.71■□□□□ 0.11
CLN3-239ENST00000628023 HLA-DQA2P01906 255 aa15.71■□□□□ 0.11
CLN3-239ENST00000628023 HMGN1P05114 100 aa15.71■□□□□ 0.11
CLN3-239ENST00000628023 CST2P09228 141 aa15.71■□□□□ 0.11
CLN3-239ENST00000628023 ZNF32P17041 273 aa15.71■□□□□ 0.11
CLN3-239ENST00000628023 CD53P19397 219 aa15.71■□□□□ 0.11
CLN3-239ENST00000628023 PAICSP22234 425 aaKnown RBP15.71■□□□□ 0.11
CLN3-239ENST00000628023 CRISP1P54107 249 aa15.71■□□□□ 0.11
CLN3-239ENST00000628023 PCBD1P61457 104 aa15.71■□□□□ 0.11
CLN3-239ENST00000628023 ESRRGP62508 458 aa15.71■□□□□ 0.11
CLN3-239ENST00000628023 NKX6-1P78426 367 aaPredicted RBP15.71■□□□□ 0.11
CLN3-239ENST00000628023 NAAAQ02083 359 aa15.71■□□□□ 0.11
CLN3-239ENST00000628023 GLO1Q04760 184 aa15.71■□□□□ 0.11
CLN3-239ENST00000628023 RAB39AQ14964 217 aa15.71■□□□□ 0.11
CLN3-239ENST00000628023 KDM4DQ6B0I6 523 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 118.9 ms