RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 KLHL26Q53HC5 615 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 ABHD17CQ6PCB6 329 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 ANGPTL5Q86XS5 388 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 UBALD2Q8IYN6 164 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 BPIFB2Q8N4F0 458 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 OR51D1Q8NGF3 324 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 OR6K6Q8NGW6 343 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 DCUN1D4Q92564 292 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 GTF3AQ92664 365 aaKnown RBP9.81□□□□□ -0.84
UPF3A-212ENST00000619079 PMM1Q92871 262 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 MALSU1Q96EH3 234 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 ELF4Q99607 663 aaPredicted RBP9.81□□□□□ -0.84
UPF3A-212ENST00000619079 IER2Q9BTL4 223 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 SLC17A9Q9BYT1 436 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 TOLLIPQ9H0E2 274 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 HRH4Q9H3N8 390 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 RXFP3Q9NSD7 469 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 DCAF16Q9NXF7 216 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 SLC2A8Q9NY64 477 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 FAM96BQ9Y3D0 163 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 TIMM10BQ9Y5J6 103 aa9.81□□□□□ -0.84
UPF3A-212ENST00000619079 ARGFXA6NJG6 315 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 VEGFDO43915 354 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 CRHP06850 196 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 DCNP07585 359 aaKnown RBP9.8□□□□□ -0.84
UPF3A-212ENST00000619079 BTF3P20290 206 aaKnown RBP9.8□□□□□ -0.84
UPF3A-212ENST00000619079 RAB5AP20339 215 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 PSMB5P28074 263 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 TACR3P29371 465 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 GPX4P36969 197 aaPredicted RBP9.8□□□□□ -0.84
UPF3A-212ENST00000619079 MAP3K8P41279 467 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 HTR5AP47898 357 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 CLDN2P57739 230 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 PLA2G7Q13093 441 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 ELOCQ15369 112 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 NR0B2Q15466 257 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 OR7A5Q15622 319 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 ZIC1Q15915 447 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 OR52W1Q6IF63 320 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 ZNF765Q7L2R6 523 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 NRROSQ86YC3 692 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 ZNF547Q8IVP9 402 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 ZNF595Q8IYB9 648 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 PAQR4Q8N4S7 273 aaPredicted RBP9.8□□□□□ -0.84
UPF3A-212ENST00000619079 ZDHHC22Q8N966 263 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 OR2L5Q8NG80 312 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 GPR148Q8TDV2 347 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 MS4A6EQ96DS6 147 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 RAB3CQ96E17 227 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 SEH1LQ96EE3 360 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 SULT4A1Q9BR01 284 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 NAA11Q9BSU3 229 aaPredicted RBP9.8□□□□□ -0.84
UPF3A-212ENST00000619079 GGACTQ9BVM4 153 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 FKRPQ9H9S5 495 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 PRDM7Q9NQW5 492 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 POLE3Q9NRF9 147 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 USP36Q9P275 1121 aaKnown RBP9.8□□□□□ -0.84
UPF3A-212ENST00000619079 A0A0A6YYH2 397 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 SYNDIG1LA6NDD5 238 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 A6NJ64 397 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 TMEM212A6NML5 194 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 FBXO24O75426 580 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 GLCEO94923 617 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 GJA4P35212 333 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 GPR1P46091 355 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 SLC6A9P48067 706 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 CX3CR1P49238 355 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 EFNB2P52799 333 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 DVL1P1P54792 670 aaPredicted RBP9.8□□□□□ -0.84
UPF3A-212ENST00000619079 IL13RA1P78552 427 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 ELAVL1Q15717 326 aaKnown RBP9.8□□□□□ -0.84
UPF3A-212ENST00000619079 ISXQ2M1V0 245 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 FNDC3BQ53EP0 1204 aaKnown RBP9.8□□□□□ -0.84
UPF3A-212ENST00000619079 ARHGAP40Q5TG30 622 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 SLC29A4Q7RTT9 530 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 OR4E2Q8NGC2 313 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 ADAMTS17Q8TE56 1095 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 TMEM106AQ96A25 262 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 FAM3DQ96BQ1 224 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 OR5B2Q96R09 309 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 GAL3ST1Q99999 423 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 NMES1Q9C002 83 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 SELENOIQ9C0D9 397 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 ATG5Q9H1Y0 275 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 RPS10P5Q9NQ39 176 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 SLC2A4RGQ9NR83 387 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 PPP4R1LQ9P1A2 415 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 IL36AQ9UHA7 158 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 LHX6Q9UPM6 363 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 CSAG2Q9Y5P2 127 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 IER3IP1Q9Y5U9 82 aa9.8□□□□□ -0.84
UPF3A-212ENST00000619079 TRAV8-7A0A075B6U6 113 aa9.79□□□□□ -0.84
UPF3A-212ENST00000619079 A0A0B4J2A0 478 aa9.79□□□□□ -0.84
UPF3A-212ENST00000619079 A0A0B4J2E0 115 aa9.79□□□□□ -0.84
UPF3A-212ENST00000619079 A0A1B0GX12 115 aa9.79□□□□□ -0.84
UPF3A-212ENST00000619079 A0A1W2PPV9 198 aa9.79□□□□□ -0.84
UPF3A-212ENST00000619079 C9orf170A2RU37 121 aa9.79□□□□□ -0.84
UPF3A-212ENST00000619079 C1QTNF3-AMACRE9PGA6 284 aa9.79□□□□□ -0.84
UPF3A-212ENST00000619079 SLC17A2O00624 439 aa9.79□□□□□ -0.84
UPF3A-212ENST00000619079 RPP14O95059 124 aaKnown RBP9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms