RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 ZNF672Q499Z4 452 aaPredicted RBP11.69□□□□□ -0.54
LINC00540-202ENST00000616974 THEM4Q5T1C6 240 aa11.69□□□□□ -0.54
LINC00540-202ENST00000616974 CORO6Q6QEF8 472 aa11.69□□□□□ -0.54
LINC00540-202ENST00000616974 TMEM108Q6UXF1 575 aa11.69□□□□□ -0.54
LINC00540-202ENST00000616974 SLC16A14Q7RTX9 510 aa11.69□□□□□ -0.54
LINC00540-202ENST00000616974 ATG16L2Q8NAA4 619 aa11.69□□□□□ -0.54
LINC00540-202ENST00000616974 CISD1Q9NZ45 108 aaKnown RBP11.69□□□□□ -0.54
LINC00540-202ENST00000616974 ABCA2Q9BZC7 2435 aa11.68□□□□□ -0.54
LINC00540-202ENST00000616974 HS3ST1O14792 307 aa11.68□□□□□ -0.54
LINC00540-202ENST00000616974 GPRIN2O60269 458 aa11.68□□□□□ -0.54
LINC00540-202ENST00000616974 WNT11O96014 354 aa11.68□□□□□ -0.54
LINC00540-202ENST00000616974 TFP02787 698 aa11.68□□□□□ -0.54
LINC00540-202ENST00000616974 DANCRP0C864 163 aa11.68□□□□□ -0.54
LINC00540-202ENST00000616974 CBR1P16152 277 aa11.68□□□□□ -0.54
LINC00540-202ENST00000616974 APEX1P27695 318 aaKnown RBP11.68□□□□□ -0.54
LINC00540-202ENST00000616974 RPS6KA3P51812 740 aa11.68□□□□□ -0.54
LINC00540-202ENST00000616974 ERVS71-1P61550 626 aa11.68□□□□□ -0.54
LINC00540-202ENST00000616974 MRPS34P82930 218 aaKnown RBP11.68□□□□□ -0.54
LINC00540-202ENST00000616974 TAF11Q15544 211 aa11.68□□□□□ -0.54
LINC00540-202ENST00000616974 KRT80Q6KB66 452 aa11.68□□□□□ -0.54
LINC00540-202ENST00000616974 FAHD1Q6P587 224 aa11.68□□□□□ -0.54
LINC00540-202ENST00000616974 VHLLQ6RSH7 139 aa11.68□□□□□ -0.54
LINC00540-202ENST00000616974 SLC37A3Q8NCC5 494 aa11.68□□□□□ -0.54
LINC00540-202ENST00000616974 IGFBPL1Q8WX77 278 aa11.68□□□□□ -0.54
LINC00540-202ENST00000616974 RBP7Q96R05 134 aa11.68□□□□□ -0.54
LINC00540-202ENST00000616974 POLE4Q9NR33 117 aa11.68□□□□□ -0.54
LINC00540-202ENST00000616974 B9D1Q9UPM9 204 aa11.68□□□□□ -0.54
LINC00540-202ENST00000616974 ABCA1O95477 2261 aa11.68□□□□□ -0.54
LINC00540-202ENST00000616974 TVP23AA6NH52 213 aa11.68□□□□□ -0.54
LINC00540-202ENST00000616974 A6NIZ1 184 aa11.68□□□□□ -0.54
LINC00540-202ENST00000616974 GAAP10253 952 aa11.68□□□□□ -0.54
LINC00540-202ENST00000616974 PTAFRP25105 342 aa11.68□□□□□ -0.54
LINC00540-202ENST00000616974 FASP25445 335 aa11.68□□□□□ -0.54
LINC00540-202ENST00000616974 CDKN1AP38936 164 aa11.68□□□□□ -0.54
LINC00540-202ENST00000616974 NR1H2P55055 460 aa11.68□□□□□ -0.54
LINC00540-202ENST00000616974 RAP1BP61224 184 aa11.68□□□□□ -0.54
LINC00540-202ENST00000616974 RAP1AP62834 184 aa11.68□□□□□ -0.54
LINC00540-202ENST00000616974 PSG4Q00888 419 aa11.68□□□□□ -0.54
LINC00540-202ENST00000616974 PABPC1L2AQ5JQF8 200 aa11.68□□□□□ -0.54
LINC00540-202ENST00000616974 ZNF774Q6NX45 483 aa11.68□□□□□ -0.54
LINC00540-202ENST00000616974 CD300LDQ6UXZ3 194 aa11.68□□□□□ -0.54
LINC00540-202ENST00000616974 FOXL2NBQ6ZUU3 175 aa11.68□□□□□ -0.54
LINC00540-202ENST00000616974 BCDIN3DQ7Z5W3 292 aaKnown RBP11.68□□□□□ -0.54
LINC00540-202ENST00000616974 YTHDF3Q7Z739 585 aaKnown RBP11.68□□□□□ -0.54
LINC00540-202ENST00000616974 LNX2Q8N448 690 aa11.68□□□□□ -0.54
LINC00540-202ENST00000616974 SMAP2Q8WU79 429 aaPredicted RBP11.68□□□□□ -0.54
LINC00540-202ENST00000616974 SIAEQ9HAT2 523 aa11.68□□□□□ -0.54
LINC00540-202ENST00000616974 MRPL22Q9NWU5 206 aaKnown RBP11.68□□□□□ -0.54
LINC00540-202ENST00000616974 FZR1Q9UM11 496 aa11.68□□□□□ -0.54
LINC00540-202ENST00000616974 LOC100509620A0A075B734 347 aa11.67□□□□□ -0.54
LINC00540-202ENST00000616974 ARRDC5A6NEK1 342 aa11.67□□□□□ -0.54
LINC00540-202ENST00000616974 CENPBD1B2RD01 187 aa11.67□□□□□ -0.54
LINC00540-202ENST00000616974 ZNF84P51523 738 aa11.67□□□□□ -0.54
LINC00540-202ENST00000616974 KEAP1Q14145 624 aa11.67□□□□□ -0.54
LINC00540-202ENST00000616974 TMEM255AQ5JRV8 349 aa11.67□□□□□ -0.54
LINC00540-202ENST00000616974 GPR139Q6DWJ6 353 aa11.67□□□□□ -0.54
LINC00540-202ENST00000616974 LINC00346Q8IVM7 164 aa11.67□□□□□ -0.54
LINC00540-202ENST00000616974 BBS1Q8NFJ9 593 aa11.67□□□□□ -0.54
LINC00540-202ENST00000616974 C11orf40Q8WZ69 217 aa11.67□□□□□ -0.54
LINC00540-202ENST00000616974 CIB1Q99828 191 aa11.67□□□□□ -0.54
LINC00540-202ENST00000616974 RBM4Q9BWF3 364 aaKnown RBP11.67□□□□□ -0.54
LINC00540-202ENST00000616974 WNT5BQ9H1J7 359 aa11.67□□□□□ -0.54
LINC00540-202ENST00000616974 POU2F3Q9UKI9 436 aa11.67□□□□□ -0.54
LINC00540-202ENST00000616974 G3V2T6 193 aa11.66□□□□□ -0.54
LINC00540-202ENST00000616974 APEHP13798 732 aaKnown RBP11.66□□□□□ -0.54
LINC00540-202ENST00000616974 CENPAP49450 140 aa11.66□□□□□ -0.54
LINC00540-202ENST00000616974 HNRNPA0Q13151 305 aaKnown RBP11.66□□□□□ -0.54
LINC00540-202ENST00000616974 GINS1Q14691 196 aa11.66□□□□□ -0.54
LINC00540-202ENST00000616974 JAZF1Q86VZ6 243 aa11.66□□□□□ -0.54
LINC00540-202ENST00000616974 ZNF101Q8IZC7 436 aa11.66□□□□□ -0.54
LINC00540-202ENST00000616974 ZCCHC24Q8N2G6 241 aaKnown RBP11.66□□□□□ -0.54
LINC00540-202ENST00000616974 LINC00471Q8N535 108 aa11.66□□□□□ -0.54
LINC00540-202ENST00000616974 OR52L1Q8NGH7 329 aa11.66□□□□□ -0.54
LINC00540-202ENST00000616974 OR5K1Q8NHB7 308 aa11.66□□□□□ -0.54
LINC00540-202ENST00000616974 YY1AP1Q9H869 796 aa11.66□□□□□ -0.54
LINC00540-202ENST00000616974 NGBQ9NPG2 151 aa11.66□□□□□ -0.54
LINC00540-202ENST00000616974 ASH2LQ9UBL3 628 aa11.66□□□□□ -0.54
LINC00540-202ENST00000616974 ATP23Q9Y6H3 246 aa11.66□□□□□ -0.54
LINC00540-202ENST00000616974 RER1O15258 196 aa11.66□□□□□ -0.54
LINC00540-202ENST00000616974 FAM157BP0CG42 384 aa11.66□□□□□ -0.54
LINC00540-202ENST00000616974 ZNF35P13682 527 aa11.66□□□□□ -0.54
LINC00540-202ENST00000616974 RBMXP38159 391 aaKnown RBP11.66□□□□□ -0.54
LINC00540-202ENST00000616974 FAM27BQ5VT28 67 aa11.66□□□□□ -0.54
LINC00540-202ENST00000616974 FAM205BPQ63HN1 556 aa11.66□□□□□ -0.54
LINC00540-202ENST00000616974 HDDC2Q7Z4H3 204 aa11.66□□□□□ -0.54
LINC00540-202ENST00000616974 ADCK1Q86TW2 530 aa11.66□□□□□ -0.54
LINC00540-202ENST00000616974 KRTAP1-3Q8IUG1 177 aa11.66□□□□□ -0.54
LINC00540-202ENST00000616974 ZNF511Q8NB15 262 aa11.66□□□□□ -0.54
LINC00540-202ENST00000616974 OR2T33Q8NG76 320 aa11.66□□□□□ -0.54
LINC00540-202ENST00000616974 PTP4A1Q93096 173 aa11.66□□□□□ -0.54
LINC00540-202ENST00000616974 FBXW5Q969U6 566 aa11.66□□□□□ -0.54
LINC00540-202ENST00000616974 USB1Q9BQ65 265 aaKnown RBP11.66□□□□□ -0.54
LINC00540-202ENST00000616974 RNF121Q9H920 327 aa11.66□□□□□ -0.54
LINC00540-202ENST00000616974 WDR76Q9H967 626 aa11.66□□□□□ -0.54
LINC00540-202ENST00000616974 S100A14Q9HCY8 104 aa11.66□□□□□ -0.54
LINC00540-202ENST00000616974 OBP2BQ9NPH6 170 aa11.66□□□□□ -0.54
LINC00540-202ENST00000616974 LHFPL6Q9Y693 200 aa11.66□□□□□ -0.54
LINC00540-202ENST00000616974 LY6HO94772 140 aa11.65□□□□□ -0.54
LINC00540-202ENST00000616974 DBHP09172 617 aa11.65□□□□□ -0.54
LINC00540-202ENST00000616974 OSMP13725 252 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms