RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 TREM2Q9NZC2 230 aa3.62□□□□□ -1.83
LINC00540-201ENST00000611481 TAC3Q9UHF0 121 aa3.62□□□□□ -1.83
LINC00540-201ENST00000611481 FBXL2Q9UKC9 423 aa3.62□□□□□ -1.83
LINC00540-201ENST00000611481 MAN1B1Q9UKM7 699 aa3.62□□□□□ -1.83
LINC00540-201ENST00000611481 MRPS33Q9Y291 106 aaKnown RBP3.62□□□□□ -1.83
LINC00540-201ENST00000611481 NOSIPQ9Y314 301 aaKnown RBP3.62□□□□□ -1.83
LINC00540-201ENST00000611481 ARL5AQ9Y689 179 aa3.62□□□□□ -1.83
LINC00540-201ENST00000611481 TET2Q6N021 2002 aaPredicted RBP3.61□□□□□ -1.83
LINC00540-201ENST00000611481 IGLV3-16A0A075B6K0 115 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 A0A0G2JMP0 313 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 A0A0X1KG70 313 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 ANKRD61A6NGH8 418 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 PCP4L1A6NKN8 68 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 WRBO00258 174 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 CCL22O00626 93 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 XPNPEP2O43895 674 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 SNX3O60493 162 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 GALR3O60755 368 aaPredicted RBP3.61□□□□□ -1.83
LINC00540-201ENST00000611481 CLPXO76031 633 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 FTH1P02794 183 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 IFNA16P05015 189 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 CHRNGP07510 517 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 F7P08709 466 aaPredicted RBP3.61□□□□□ -1.83
LINC00540-201ENST00000611481 IRF2P14316 349 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 DAOP14920 347 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 S1PR1P21453 382 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 PAX7P23759 505 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 HNRNPH1P31943 449 aaKnown RBP3.61□□□□□ -1.83
LINC00540-201ENST00000611481 PRDX2P32119 198 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 SLC6A8P48029 635 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 HADHBP55084 474 aaKnown RBP3.61□□□□□ -1.83
LINC00540-201ENST00000611481 CDH12P55289 794 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 CTBP2P56545 445 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 CD81P60033 236 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 XIAPP98170 497 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 HSPA14Q0VDF9 509 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 IL18Q14116 193 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 PON3Q15166 354 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 GUSBP1Q15486 140 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 DEFB134Q4QY38 66 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 PHYHD1Q5SRE7 291 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 CCDC122Q5T0U0 273 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 RESP18Q5W5W9 173 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 RAD9BQ6WBX8 426 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 Q6ZSR9 355 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 SNX20Q7Z614 316 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 SERPINA9Q86WD7 417 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 IFNEQ86WN2 208 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 COMMD2Q86X83 199 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 SLC22A15Q8IZD6 547 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 UBE2J2Q8N2K1 259 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 SPERTQ8NA61 448 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 PPFIBP2Q8ND30 876 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 OR4M2Q8NGB6 313 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 OR6K3Q8NGY3 331 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 CLDND2Q8NHS1 167 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 HMGCLL1Q8TB92 370 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 FNDC9Q8TBE3 224 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 TRMT10AQ8TBZ6 339 aaKnown RBP3.61□□□□□ -1.83
LINC00540-201ENST00000611481 UBTD2Q8WUN7 234 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 RAD51AP1Q96B01 352 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 PYCR2Q96C36 320 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 SLC30A2Q9BRI3 323 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 HAUS8Q9BT25 410 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 PINK1Q9BXM7 581 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 POTEKPQ9BYX7 375 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 SEMA6AQ9H2E6 1030 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 SLA2Q9H6Q3 261 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 C10orf88Q9H8K7 445 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 TNFRSF19Q9NS68 423 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 TEX10Q9NXF1 929 aaPredicted RBP3.61□□□□□ -1.83
LINC00540-201ENST00000611481 SMARCAL1Q9NZC9 954 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 C1RLQ9NZP8 487 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 HACD3Q9P035 362 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 B3GAT1Q9P2W7 334 aa3.61□□□□□ -1.83
LINC00540-201ENST00000611481 HUWE1Q7Z6Z7 4374 aaKnown RBP3.6□□□□□ -1.83
LINC00540-201ENST00000611481 TRAV18A0A075B6X5 111 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 ERI2A8K979 691 aaKnown RBP3.6□□□□□ -1.83
LINC00540-201ENST00000611481 ZNF208O43345 1280 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 AQP8O94778 261 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 AP2A2O94973 939 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 NDUFA7O95182 113 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 MT-ND1P03886 318 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 CALB1P05937 261 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 APRTP07741 180 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 ALOX5P09917 674 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 ZCCHC18P0CG32 403 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 RNH1P13489 461 aaKnown RBP3.6□□□□□ -1.83
LINC00540-201ENST00000611481 ZNF12P17014 697 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 PTBP1P26599 531 aaKnown RBP eCLIP3.6□□□□□ -1.83
LINC00540-201ENST00000611481 BDKRB2P30411 391 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 SSTR1P30872 391 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 BMI1P35226 326 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 MAGEA1P43355 309 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 RGS4P49798 205 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 PPT1P50897 306 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 GSCP56915 257 aaPredicted RBP3.6□□□□□ -1.83
LINC00540-201ENST00000611481 CARD18P57730 90 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 FBXW4P57775 412 aa3.6□□□□□ -1.83
LINC00540-201ENST00000611481 EIF3EP60228 445 aaKnown RBP3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms