RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 MSRAQ9UJ68 235 aa16.59■□□□□ 0.25
UPF1-210ENST00000600689 COLEC10Q9Y6Z7 277 aa16.59■□□□□ 0.25
UPF1-210ENST00000600689 TMEM218A2RU14 115 aa16.59■□□□□ 0.25
UPF1-210ENST00000600689 OR2T1O43869 369 aa16.59■□□□□ 0.25
UPF1-210ENST00000600689 ACTL6AO96019 429 aa16.59■□□□□ 0.25
UPF1-210ENST00000600689 CYB5AP00167 134 aa16.59■□□□□ 0.25
UPF1-210ENST00000600689 PPP1CAP62136 330 aa16.59■□□□□ 0.25
UPF1-210ENST00000600689 ZNHIT3Q15649 155 aaPredicted RBP16.59■□□□□ 0.25
UPF1-210ENST00000600689 C11orf87Q6NUJ2 197 aa16.59■□□□□ 0.25
UPF1-210ENST00000600689 MOB3CQ70IA8 216 aa16.59■□□□□ 0.25
UPF1-210ENST00000600689 PM20D2Q8IYS1 436 aa16.59■□□□□ 0.25
UPF1-210ENST00000600689 EIF4E3Q8N5X7 224 aaKnown RBP16.59■□□□□ 0.25
UPF1-210ENST00000600689 GVQW1Q8N7I0 195 aa16.59■□□□□ 0.25
UPF1-210ENST00000600689 OR51A2Q8NGJ7 313 aa16.59■□□□□ 0.25
UPF1-210ENST00000600689 SLC6A7Q99884 636 aa16.59■□□□□ 0.25
UPF1-210ENST00000600689 GRHPRQ9UBQ7 328 aa16.59■□□□□ 0.25
UPF1-210ENST00000600689 LAMA1P25391 3075 aa16.59■□□□□ 0.25
UPF1-210ENST00000600689 EIF4E2O60573 245 aaKnown RBP16.59■□□□□ 0.25
UPF1-210ENST00000600689 PRKXP51817 358 aa16.59■□□□□ 0.25
UPF1-210ENST00000600689 RPS21P63220 83 aaKnown RBP16.59■□□□□ 0.25
UPF1-210ENST00000600689 CXADRP78310 365 aa16.59■□□□□ 0.25
UPF1-210ENST00000600689 DLX2Q07687 328 aaPredicted RBP16.59■□□□□ 0.25
UPF1-210ENST00000600689 SCRN3Q0VDG4 424 aa16.59■□□□□ 0.25
UPF1-210ENST00000600689 MEP1BQ16820 701 aa16.59■□□□□ 0.25
UPF1-210ENST00000600689 TMEM200AQ86VY9 491 aa16.59■□□□□ 0.25
UPF1-210ENST00000600689 GTPBP8Q8N3Z3 284 aaPredicted RBP16.59■□□□□ 0.25
UPF1-210ENST00000600689 NANPQ8TBE9 248 aa16.59■□□□□ 0.25
UPF1-210ENST00000600689 PHYHIPQ92561 330 aa16.59■□□□□ 0.25
UPF1-210ENST00000600689 SELENOIQ9C0D9 397 aa16.59■□□□□ 0.25
UPF1-210ENST00000600689 SPACA6W5XKT8 324 aa16.59■□□□□ 0.25
UPF1-210ENST00000600689 A0A0A6YYC8 382 aaPredicted RBP16.58■□□□□ 0.24
UPF1-210ENST00000600689 RNF222A6NCQ9 220 aa16.58■□□□□ 0.24
UPF1-210ENST00000600689 I3L1I5 382 aaPredicted RBP16.58■□□□□ 0.24
UPF1-210ENST00000600689 CDC40O60508 579 aaKnown RBP eCLIP16.58■□□□□ 0.24
UPF1-210ENST00000600689 COL9A1P20849 921 aa16.58■□□□□ 0.24
UPF1-210ENST00000600689 RAB13P51153 203 aa16.58■□□□□ 0.24
UPF1-210ENST00000600689 HFEQ30201 348 aa16.58■□□□□ 0.24
UPF1-210ENST00000600689 ZNF776Q68DI1 518 aaPredicted RBP16.58■□□□□ 0.24
UPF1-210ENST00000600689 TMPPEQ6ZT21 453 aa16.58■□□□□ 0.24
UPF1-210ENST00000600689 SLC16A13Q7RTY0 426 aa16.58■□□□□ 0.24
UPF1-210ENST00000600689 SLC16A9Q7RTY1 509 aa16.58■□□□□ 0.24
UPF1-210ENST00000600689 ZNF417Q8TAU3 575 aa16.58■□□□□ 0.24
UPF1-210ENST00000600689 MFRPQ9BY79 579 aa16.58■□□□□ 0.24
UPF1-210ENST00000600689 A0A0D9SG52 128 aa16.58■□□□□ 0.24
UPF1-210ENST00000600689 ZNF736B4DX44 427 aaPredicted RBP16.58■□□□□ 0.24
UPF1-210ENST00000600689 OIP5O43482 229 aa16.58■□□□□ 0.24
UPF1-210ENST00000600689 BCL2L11O43521 198 aa16.58■□□□□ 0.24
UPF1-210ENST00000600689 PMS2P2O95744 297 aa16.58■□□□□ 0.24
UPF1-210ENST00000600689 SPARCP09486 303 aa16.58■□□□□ 0.24
UPF1-210ENST00000600689 PGAM2P15259 253 aa16.58■□□□□ 0.24
UPF1-210ENST00000600689 KIR3DL2P43630 455 aa16.58■□□□□ 0.24
UPF1-210ENST00000600689 ADAM8P78325 824 aa16.58■□□□□ 0.24
UPF1-210ENST00000600689 PAN3Q58A45 887 aaKnown RBP16.58■□□□□ 0.24
UPF1-210ENST00000600689 INO80EQ8NBZ0 244 aaPredicted RBP16.58■□□□□ 0.24
UPF1-210ENST00000600689 ROBO4Q8WZ75 1007 aa16.58■□□□□ 0.24
UPF1-210ENST00000600689 SLC25A36Q96CQ1 311 aa16.58■□□□□ 0.24
UPF1-210ENST00000600689 SEH1LQ96EE3 360 aa16.58■□□□□ 0.24
UPF1-210ENST00000600689 ZNF426Q9BUY5 554 aa16.58■□□□□ 0.24
UPF1-210ENST00000600689 POTEKPQ9BYX7 375 aa16.58■□□□□ 0.24
UPF1-210ENST00000600689 HRH4Q9H3N8 390 aa16.58■□□□□ 0.24
UPF1-210ENST00000600689 TMED7Q9Y3B3 224 aa16.58■□□□□ 0.24
UPF1-210ENST00000600689 AGTR1P30556 359 aa16.57■□□□□ 0.24
UPF1-210ENST00000600689 TSFMP43897 325 aaKnown RBP16.57■□□□□ 0.24
UPF1-210ENST00000600689 MECP2P51608 486 aaKnown RBP16.57■□□□□ 0.24
UPF1-210ENST00000600689 HYAL1Q12794 435 aa16.57■□□□□ 0.24
UPF1-210ENST00000600689 CCDC157Q569K6 752 aa16.57■□□□□ 0.24
UPF1-210ENST00000600689 CBLN3Q6UW01 205 aa16.57■□□□□ 0.24
UPF1-210ENST00000600689 ABHD13Q7L211 337 aa16.57■□□□□ 0.24
UPF1-210ENST00000600689 SVBPQ8N300 66 aa16.57■□□□□ 0.24
UPF1-210ENST00000600689 KCNRGQ8N5I3 272 aa16.57■□□□□ 0.24
UPF1-210ENST00000600689 TAS2R4Q9NYW5 299 aa16.57■□□□□ 0.24
UPF1-210ENST00000600689 ASCC3Q8N3C0 2202 aaKnown RBP16.57■□□□□ 0.24
UPF1-210ENST00000600689 MPTX1A8MV57 137 aa16.57■□□□□ 0.24
UPF1-210ENST00000600689 SRPX2O60687 465 aaPredicted RBP16.57■□□□□ 0.24
UPF1-210ENST00000600689 APBB3O95704 486 aa16.57■□□□□ 0.24
UPF1-210ENST00000600689 CSF2RBP32927 897 aa16.57■□□□□ 0.24
UPF1-210ENST00000600689 GPR143P51810 404 aa16.57■□□□□ 0.24
UPF1-210ENST00000600689 MGAT2Q10469 447 aa16.57■□□□□ 0.24
UPF1-210ENST00000600689 PPP1R1AQ13522 171 aa16.57■□□□□ 0.24
UPF1-210ENST00000600689 IGSF11Q5DX21 431 aa16.57■□□□□ 0.24
UPF1-210ENST00000600689 RAB11FIP2Q7L804 512 aa16.57■□□□□ 0.24
UPF1-210ENST00000600689 MARCH3Q86UD3 253 aa16.57■□□□□ 0.24
UPF1-210ENST00000600689 FOXRED2Q8IWF2 684 aa16.57■□□□□ 0.24
UPF1-210ENST00000600689 PHOSPHO1Q8TCT1 267 aa16.57■□□□□ 0.24
UPF1-210ENST00000600689 STACQ99469 402 aa16.57■□□□□ 0.24
UPF1-210ENST00000600689 CCDC3Q9BQI4 270 aa16.57■□□□□ 0.24
UPF1-210ENST00000600689 APOOQ9BUR5 198 aa16.57■□□□□ 0.24
UPF1-210ENST00000600689 GAREM1Q9H706 876 aa16.57■□□□□ 0.24
UPF1-210ENST00000600689 TNFSF18Q9UNG2 199 aa16.57■□□□□ 0.24
UPF1-210ENST00000600689 SLC17A4Q9Y2C5 497 aa16.57■□□□□ 0.24
UPF1-210ENST00000600689 TO15178 435 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 HPGDP15428 266 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 ST6GAL1P15907 406 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 CASRP41180 1078 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 SWI5Q1ZZU3 235 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 ZNF684Q5T5D7 378 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 RTN4RL2Q86UN3 420 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 OR1J4Q8NGS1 313 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 C15orf40Q8WUR7 153 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 RBM18Q96H35 190 aaKnown RBP16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms