RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 NOX3Q9HBY0 568 aa16.85■□□□□ 0.29
UPF1-209ENST00000600310 CST2P09228 141 aa16.84■□□□□ 0.29
UPF1-209ENST00000600310 MMP7P09237 267 aaPredicted RBP16.84■□□□□ 0.29
UPF1-209ENST00000600310 GAAP10253 952 aa16.84■□□□□ 0.29
UPF1-209ENST00000600310 POLR2IP36954 125 aaKnown RBP16.84■□□□□ 0.29
UPF1-209ENST00000600310 RAD23AP54725 363 aa16.84■□□□□ 0.29
UPF1-209ENST00000600310 RAB1AP62820 205 aa16.84■□□□□ 0.29
UPF1-209ENST00000600310 GLO1Q04760 184 aa16.84■□□□□ 0.29
UPF1-209ENST00000600310 BSPH1Q075Z2 132 aa16.84■□□□□ 0.29
UPF1-209ENST00000600310 DBPQ10586 325 aaPredicted RBP16.84■□□□□ 0.29
UPF1-209ENST00000600310 KCNMB1Q16558 191 aa16.84■□□□□ 0.29
UPF1-209ENST00000600310 FBXW10Q5XX13 1052 aa16.84■□□□□ 0.29
UPF1-209ENST00000600310 TMEM200AQ86VY9 491 aa16.84■□□□□ 0.29
UPF1-209ENST00000600310 FOXN4Q96NZ1 517 aa16.84■□□□□ 0.29
UPF1-209ENST00000600310 SLC38A2Q96QD8 506 aa16.84■□□□□ 0.29
UPF1-209ENST00000600310 WACQ9BTA9 647 aa16.84■□□□□ 0.29
UPF1-209ENST00000600310 CLEC4MQ9H2X3 399 aaPredicted RBP16.84■□□□□ 0.29
UPF1-209ENST00000600310 DCLRE1BQ9H816 532 aa16.84■□□□□ 0.29
UPF1-209ENST00000600310 ORC6Q9Y5N6 252 aa16.84■□□□□ 0.29
UPF1-209ENST00000600310 IGHV1-18A0A0C4DH31 117 aa16.83■□□□□ 0.28
UPF1-209ENST00000600310 MPZL1O95297 269 aa16.83■□□□□ 0.28
UPF1-209ENST00000600310 CD3EP07766 207 aa16.83■□□□□ 0.28
UPF1-209ENST00000600310 PYCR1P32322 319 aa16.83■□□□□ 0.28
UPF1-209ENST00000600310 PTDSS1P48651 473 aaKnown RBP16.83■□□□□ 0.28
UPF1-209ENST00000600310 CENPAP49450 140 aa16.83■□□□□ 0.28
UPF1-209ENST00000600310 IDH3GP51553 393 aaPredicted RBP16.83■□□□□ 0.28
UPF1-209ENST00000600310 LSM6P62312 80 aaKnown RBP16.83■□□□□ 0.28
UPF1-209ENST00000600310 HSF2Q03933 536 aa16.83■□□□□ 0.28
UPF1-209ENST00000600310 ENDOGQ14249 297 aaKnown RBP16.83■□□□□ 0.28
UPF1-209ENST00000600310 C12orf73Q69YU5 71 aa16.83■□□□□ 0.28
UPF1-209ENST00000600310 TMEM53Q6P2H8 277 aa16.83■□□□□ 0.28
UPF1-209ENST00000600310 UGT2A3Q6UWM9 527 aa16.83■□□□□ 0.28
UPF1-209ENST00000600310 SLC26A10Q8NG04 563 aa16.83■□□□□ 0.28
UPF1-209ENST00000600310 OR9Q1Q8NGQ5 310 aa16.83■□□□□ 0.28
UPF1-209ENST00000600310 C11orf40Q8WZ69 217 aa16.83■□□□□ 0.28
UPF1-209ENST00000600310 PTP4A1Q93096 173 aa16.83■□□□□ 0.28
UPF1-209ENST00000600310 FBXO17Q96EF6 278 aa16.83■□□□□ 0.28
UPF1-209ENST00000600310 ZNF416Q9BWM5 594 aa16.83■□□□□ 0.28
UPF1-209ENST00000600310 PRRG3Q9BZD7 231 aa16.83■□□□□ 0.28
UPF1-209ENST00000600310 RIBC2Q9H4K1 309 aa16.83■□□□□ 0.28
UPF1-209ENST00000600310 RNF121Q9H920 327 aa16.83■□□□□ 0.28
UPF1-209ENST00000600310 EMC7Q9NPA0 242 aa16.83■□□□□ 0.28
UPF1-209ENST00000600310 CCNB1IP1Q9NPC3 277 aa16.83■□□□□ 0.28
UPF1-209ENST00000600310 TVP23BQ9NYZ1 205 aa16.83■□□□□ 0.28
UPF1-209ENST00000600310 FBXL3Q9UKT7 428 aa16.83■□□□□ 0.28
UPF1-209ENST00000600310 RNF115Q9Y4L5 304 aa16.83■□□□□ 0.28
UPF1-209ENST00000600310 A0A1W2PPR1 153 aa16.82■□□□□ 0.28
UPF1-209ENST00000600310 FAM183AA6NL82 134 aa16.82■□□□□ 0.28
UPF1-209ENST00000600310 C12orf71A8MTZ7 269 aa16.82■□□□□ 0.28
UPF1-209ENST00000600310 FAM171A2A8MVW0 826 aa16.82■□□□□ 0.28
UPF1-209ENST00000600310 RAB36O95755 333 aa16.82■□□□□ 0.28
UPF1-209ENST00000600310 GPANK1O95872 356 aa16.82■□□□□ 0.28
UPF1-209ENST00000600310 CECR9P0C854 216 aa16.82■□□□□ 0.28
UPF1-209ENST00000600310 SPI1P17947 270 aa16.82■□□□□ 0.28
UPF1-209ENST00000600310 PAICSP22234 425 aaKnown RBP16.82■□□□□ 0.28
UPF1-209ENST00000600310 TRIP10Q15642 601 aa16.82■□□□□ 0.28
UPF1-209ENST00000600310 SNAPC1Q16533 368 aa16.82■□□□□ 0.28
UPF1-209ENST00000600310 SYT9Q86SS6 491 aa16.82■□□□□ 0.28
UPF1-209ENST00000600310 CDC20BQ86Y33 519 aa16.82■□□□□ 0.28
UPF1-209ENST00000600310 PROKR2Q8NFJ6 384 aa16.82■□□□□ 0.28
UPF1-209ENST00000600310 ZNRF4Q8WWF5 429 aa16.82■□□□□ 0.28
UPF1-209ENST00000600310 PLEKHA8Q96JA3 519 aa16.82■□□□□ 0.28
UPF1-209ENST00000600310 RADILQ96JH8 1075 aa16.82■□□□□ 0.28
UPF1-209ENST00000600310 C8orf4Q9NR00 106 aa16.82■□□□□ 0.28
UPF1-209ENST00000600310 PRR23D1E9PI22 279 aaPredicted RBP16.81■□□□□ 0.28
UPF1-209ENST00000600310 H0YHG0 523 aa16.81■□□□□ 0.28
UPF1-209ENST00000600310 ABCD4O14678 606 aa16.81■□□□□ 0.28
UPF1-209ENST00000600310 CASQ2O14958 399 aaPredicted RBP16.81■□□□□ 0.28
UPF1-209ENST00000600310 PLAUP00749 431 aa16.81■□□□□ 0.28
UPF1-209ENST00000600310 SERPINA5P05154 406 aa16.81■□□□□ 0.28
UPF1-209ENST00000600310 CELA3BP08861 270 aa16.81■□□□□ 0.28
UPF1-209ENST00000600310 PRR23D2P0DMB1 279 aaPredicted RBP16.81■□□□□ 0.28
UPF1-209ENST00000600310 CLUP10909 449 aa16.81■□□□□ 0.28
UPF1-209ENST00000600310 ZNF14P17017 642 aaPredicted RBP16.81■□□□□ 0.28
UPF1-209ENST00000600310 ZNF32P17041 273 aa16.81■□□□□ 0.28
UPF1-209ENST00000600310 PCBD1P61457 104 aa16.81■□□□□ 0.28
UPF1-209ENST00000600310 EFNB1P98172 346 aa16.81■□□□□ 0.28
UPF1-209ENST00000600310 NAAAQ02083 359 aa16.81■□□□□ 0.28
UPF1-209ENST00000600310 PLBD1Q6P4A8 553 aa16.81■□□□□ 0.28
UPF1-209ENST00000600310 ZNF704Q6ZNC4 412 aaPredicted RBP16.81■□□□□ 0.28
UPF1-209ENST00000600310 MYPOPQ86VE0 399 aaPredicted RBP16.81■□□□□ 0.28
UPF1-209ENST00000600310 IL17RDQ8NFM7 739 aa16.81■□□□□ 0.28
UPF1-209ENST00000600310 HCAR1Q9BXC0 346 aa16.81■□□□□ 0.28
UPF1-209ENST00000600310 MED20Q9H944 212 aa16.81■□□□□ 0.28
UPF1-209ENST00000600310 HINT3Q9NQE9 182 aaKnown RBP16.81■□□□□ 0.28
UPF1-209ENST00000600310 TIMM10BQ9Y5J6 103 aa16.81■□□□□ 0.28
UPF1-209ENST00000600310 E9PQ18 207 aa16.8■□□□□ 0.28
UPF1-209ENST00000600310 PRKYO43930 277 aa16.8■□□□□ 0.28
UPF1-209ENST00000600310 TFP02787 698 aa16.8■□□□□ 0.28
UPF1-209ENST00000600310 GYPBP06028 91 aa16.8■□□□□ 0.28
UPF1-209ENST00000600310 PEX2P28328 305 aa16.8■□□□□ 0.28
UPF1-209ENST00000600310 BLVRAP53004 296 aa16.8■□□□□ 0.28
UPF1-209ENST00000600310 KRTAP10-9P60411 292 aa16.8■□□□□ 0.28
UPF1-209ENST00000600310 PSG4Q00888 419 aa16.8■□□□□ 0.28
UPF1-209ENST00000600310 TEKQ02763 1124 aa16.8■□□□□ 0.28
UPF1-209ENST00000600310 RAB39AQ14964 217 aa16.8■□□□□ 0.28
UPF1-209ENST00000600310 ZIK1Q3SY52 487 aaPredicted RBP16.8■□□□□ 0.28
UPF1-209ENST00000600310 LINC01590Q5TEZ4 76 aa16.8■□□□□ 0.28
UPF1-209ENST00000600310 OTPQ5XKR4 325 aa16.8■□□□□ 0.28
UPF1-209ENST00000600310 LPCAT4Q643R3 524 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms