RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 KHDRBS3O75525 346 aaKnown RBP13.16□□□□□ -0.3
LIG1-219ENST00000600055 CIB2O75838 187 aa13.16□□□□□ -0.3
LIG1-219ENST00000600055 MPZL1O95297 269 aa13.16□□□□□ -0.3
LIG1-219ENST00000600055 GPANK1O95872 356 aa13.16□□□□□ -0.3
LIG1-219ENST00000600055 MSR1P21757 451 aa13.16□□□□□ -0.3
LIG1-219ENST00000600055 NOS3P29474 1203 aa13.16□□□□□ -0.3
LIG1-219ENST00000600055 APOBEC3AP31941 199 aaPredicted RBP13.16□□□□□ -0.3
LIG1-219ENST00000600055 THBS4P35443 961 aa13.16□□□□□ -0.3
LIG1-219ENST00000600055 GUCA1AP43080 201 aaPredicted RBP13.16□□□□□ -0.3
LIG1-219ENST00000600055 ADAM8P78325 824 aa13.16□□□□□ -0.3
LIG1-219ENST00000600055 GK3PQ14409 553 aa13.16□□□□□ -0.3
LIG1-219ENST00000600055 PABPC1L2AQ5JQF8 200 aa13.16□□□□□ -0.3
LIG1-219ENST00000600055 C11orf71Q6IPW1 123 aa13.16□□□□□ -0.3
LIG1-219ENST00000600055 DPPA2Q7Z7J5 298 aa13.16□□□□□ -0.3
LIG1-219ENST00000600055 LURAP1LQ8IV03 231 aa13.16□□□□□ -0.3
LIG1-219ENST00000600055 LRRC75A-AS1Q8N1F1 130 aa13.16□□□□□ -0.3
LIG1-219ENST00000600055 PAQR4Q8N4S7 273 aaPredicted RBP13.16□□□□□ -0.3
LIG1-219ENST00000600055 WFDC11Q8NEX6 87 aa13.16□□□□□ -0.3
LIG1-219ENST00000600055 SDR9C7Q8NEX9 313 aa13.16□□□□□ -0.3
LIG1-219ENST00000600055 IL17RDQ8NFM7 739 aa13.16□□□□□ -0.3
LIG1-219ENST00000600055 OR4F15Q8NGB8 312 aa13.16□□□□□ -0.3
LIG1-219ENST00000600055 OR52E2Q8NGJ4 325 aa13.16□□□□□ -0.3
LIG1-219ENST00000600055 AKR7LQ8NHP1 331 aa13.16□□□□□ -0.3
LIG1-219ENST00000600055 ZNF416Q9BWM5 594 aa13.16□□□□□ -0.3
LIG1-219ENST00000600055 TSSK6Q9BXA6 273 aa13.16□□□□□ -0.3
LIG1-219ENST00000600055 GSX2Q9BZM3 304 aa13.16□□□□□ -0.3
LIG1-219ENST00000600055 KCNN2Q9H2S1 579 aa13.16□□□□□ -0.3
LIG1-219ENST00000600055 FN3KQ9H479 309 aa13.16□□□□□ -0.3
LIG1-219ENST00000600055 NTN4Q9HB63 628 aa13.16□□□□□ -0.3
LIG1-219ENST00000600055 SRA1Q9HD15 236 aaKnown RBP13.16□□□□□ -0.3
LIG1-219ENST00000600055 CCNB1IP1Q9NPC3 277 aa13.16□□□□□ -0.3
LIG1-219ENST00000600055 CA10Q9NS85 328 aa13.16□□□□□ -0.3
LIG1-219ENST00000600055 CBLN4Q9NTU7 201 aa13.16□□□□□ -0.3
LIG1-219ENST00000600055 TBC1D23Q9NUY8 699 aa13.16□□□□□ -0.3
LIG1-219ENST00000600055 ZNF701Q9NV72 531 aaPredicted RBP13.16□□□□□ -0.3
LIG1-219ENST00000600055 ARMC1Q9NVT9 282 aa13.16□□□□□ -0.3
LIG1-219ENST00000600055 DSCAMO60469 2012 aa13.16□□□□□ -0.3
LIG1-219ENST00000600055 CCDC168Q8NDH2 2452 aa13.16□□□□□ -0.3
LIG1-219ENST00000600055 OR6C68A6NDL8 312 aa13.15□□□□□ -0.3
LIG1-219ENST00000600055 RRP9O43818 475 aaKnown RBP13.15□□□□□ -0.3
LIG1-219ENST00000600055 IDH3BO43837 385 aa13.15□□□□□ -0.3
LIG1-219ENST00000600055 NDUFS7O75251 213 aa13.15□□□□□ -0.3
LIG1-219ENST00000600055 CST2P09228 141 aa13.15□□□□□ -0.3
LIG1-219ENST00000600055 PAX1P15863 534 aa13.15□□□□□ -0.3
LIG1-219ENST00000600055 GSTM3P21266 225 aa13.15□□□□□ -0.3
LIG1-219ENST00000600055 APEX1P27695 318 aaKnown RBP13.15□□□□□ -0.3
LIG1-219ENST00000600055 CENPAP49450 140 aa13.15□□□□□ -0.3
LIG1-219ENST00000600055 PSG4Q00888 419 aa13.15□□□□□ -0.3
LIG1-219ENST00000600055 HSF2Q03933 536 aa13.15□□□□□ -0.3
LIG1-219ENST00000600055 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.15□□□□□ -0.3
LIG1-219ENST00000600055 SNTB2Q13425 540 aaKnown RBP13.15□□□□□ -0.3
LIG1-219ENST00000600055 DAG1Q14118 895 aa13.15□□□□□ -0.3
LIG1-219ENST00000600055 ADIPOQQ15848 244 aa13.15□□□□□ -0.3
LIG1-219ENST00000600055 MST1LQ2TV78 715 aa13.15□□□□□ -0.3
LIG1-219ENST00000600055 RPL13AP3Q6NVV1 102 aa13.15□□□□□ -0.3
LIG1-219ENST00000600055 CD300LDQ6UXZ3 194 aa13.15□□□□□ -0.3
LIG1-219ENST00000600055 CPEB3Q8NE35 698 aaKnown RBP13.15□□□□□ -0.3
LIG1-219ENST00000600055 SLC30A7Q8NEW0 376 aa13.15□□□□□ -0.3
LIG1-219ENST00000600055 NUP37Q8NFH4 326 aa13.15□□□□□ -0.3
LIG1-219ENST00000600055 OR4Q3Q8NH05 313 aa13.15□□□□□ -0.3
LIG1-219ENST00000600055 RAB3IPQ96QF0 476 aaPredicted RBP13.15□□□□□ -0.3
LIG1-219ENST00000600055 CACNG6Q9BXT2 260 aa13.15□□□□□ -0.3
LIG1-219ENST00000600055 WNT5BQ9H1J7 359 aa13.15□□□□□ -0.3
LIG1-219ENST00000600055 RPRD1BQ9NQG5 326 aaKnown RBP13.15□□□□□ -0.3
LIG1-219ENST00000600055 REV1Q9UBZ9 1251 aa13.15□□□□□ -0.3
LIG1-219ENST00000600055 FBXL3Q9UKT7 428 aa13.15□□□□□ -0.3
LIG1-219ENST00000600055 B9D1Q9UPM9 204 aa13.15□□□□□ -0.3
LIG1-219ENST00000600055 MYO9AB2RTY4 2548 aa13.15□□□□□ -0.3
LIG1-219ENST00000600055 IGLV1-36A0A0B4J1U3 117 aa13.14□□□□□ -0.31
LIG1-219ENST00000600055 ARRDC5A6NEK1 342 aa13.14□□□□□ -0.31
LIG1-219ENST00000600055 FAM171A2A8MVW0 826 aa13.14□□□□□ -0.31
LIG1-219ENST00000600055 GPRIN2O60269 458 aa13.14□□□□□ -0.31
LIG1-219ENST00000600055 TMCC2O75069 709 aa13.14□□□□□ -0.31
LIG1-219ENST00000600055 RENP00797 406 aa13.14□□□□□ -0.31
LIG1-219ENST00000600055 OR4A8P0C604 315 aa13.14□□□□□ -0.31
LIG1-219ENST00000600055 NR4A1P22736 598 aa13.14□□□□□ -0.31
LIG1-219ENST00000600055 ATP5J2P56134 94 aa13.14□□□□□ -0.31
LIG1-219ENST00000600055 PLP2Q04941 152 aa13.14□□□□□ -0.31
LIG1-219ENST00000600055 MSMPQ1L6U9 139 aa13.14□□□□□ -0.31
LIG1-219ENST00000600055 Q5PR19 223 aa13.14□□□□□ -0.31
LIG1-219ENST00000600055 ZNF362Q5T0B9 420 aaPredicted RBP13.14□□□□□ -0.31
LIG1-219ENST00000600055 GLB1L2Q8IW92 636 aa13.14□□□□□ -0.31
LIG1-219ENST00000600055 OR6V1Q8N148 313 aa13.14□□□□□ -0.31
LIG1-219ENST00000600055 CYB561A3Q8NBI2 242 aa13.14□□□□□ -0.31
LIG1-219ENST00000600055 NPEPL1Q8NDH3 523 aa13.14□□□□□ -0.31
LIG1-219ENST00000600055 C11orf40Q8WZ69 217 aa13.14□□□□□ -0.31
LIG1-219ENST00000600055 GRIP2Q9C0E4 1043 aa13.14□□□□□ -0.31
LIG1-219ENST00000600055 OR2H1Q9GZK4 316 aa13.14□□□□□ -0.31
LIG1-219ENST00000600055 GDF2Q9UK05 429 aaPredicted RBP13.14□□□□□ -0.31
LIG1-219ENST00000600055 AP4S1Q9Y587 144 aa13.14□□□□□ -0.31
LIG1-219ENST00000600055 IQCMA0A1B0GVH7 501 aa13.13□□□□□ -0.31
LIG1-219ENST00000600055 DEAF1O75398 565 aaPredicted RBP13.13□□□□□ -0.31
LIG1-219ENST00000600055 CRABP1P29762 137 aa13.13□□□□□ -0.31
LIG1-219ENST00000600055 SERPINF1P36955 418 aa13.13□□□□□ -0.31
LIG1-219ENST00000600055 COX10Q12887 443 aa13.13□□□□□ -0.31
LIG1-219ENST00000600055 ATP6AP1Q15904 470 aa13.13□□□□□ -0.31
LIG1-219ENST00000600055 MEP1BQ16820 701 aa13.13□□□□□ -0.31
LIG1-219ENST00000600055 SWI5Q1ZZU3 235 aa13.13□□□□□ -0.31
LIG1-219ENST00000600055 SLC36A3Q495N2 470 aa13.13□□□□□ -0.31
LIG1-219ENST00000600055 ZNF774Q6NX45 483 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms