RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 LIPAP38571 399 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 PLA2G5P39877 138 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 GDI2P50395 445 aaKnown RBP5.5□□□□□ -1.53
LIG3-206ENST00000586058 SUCLG1P53597 346 aaKnown RBP5.5□□□□□ -1.53
LIG3-206ENST00000586058 PER3P56645 1201 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 PCBD1P61457 104 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 LSM3P62310 102 aaKnown RBP5.5□□□□□ -1.53
LIG3-206ENST00000586058 GRB2P62993 217 aaKnown RBP5.5□□□□□ -1.53
LIG3-206ENST00000586058 ZNF85Q03923 595 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 SCRN3Q0VDG4 424 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 AQP6Q13520 282 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 SGCAQ16586 387 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 KRTCAP3Q53RY4 240 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 C10orf128Q5T292 105 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 RIPPLY2Q5TAB7 128 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 LINC01590Q5TEZ4 76 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 ARL9Q6T311 187 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 UNQ6494/PRO21346Q6UXR6 183 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 B3GLCTQ6Y288 498 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 Q6ZS92 163 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 DCXRQ7Z4W1 244 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 PHC2Q8IXK0 858 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 TIGD4Q8IY51 512 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 ZNF679Q8IYX0 411 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 EXD3Q8N9H8 876 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 SLC26A10Q8NG04 563 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 TSEN15Q8WW01 171 aaKnown RBP5.5□□□□□ -1.53
LIG3-206ENST00000586058 ROBO4Q8WZ75 1007 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 AP3S1Q92572 193 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 MCHR2Q969V1 340 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 SMIM19Q96E16 107 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 GMPPAQ96IJ6 420 aaPredicted RBP5.5□□□□□ -1.53
LIG3-206ENST00000586058 TXNDC15Q96J42 360 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 KCTD7Q96MP8 289 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 ALKBH3Q96Q83 286 aaPredicted RBP5.5□□□□□ -1.53
LIG3-206ENST00000586058 TRIB1Q96RU8 372 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 DOK1Q99704 481 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 SPOCK3Q9BQ16 436 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 TMED9Q9BVK6 235 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 TSPAN10Q9H1Z9 355 aaPredicted RBP5.5□□□□□ -1.53
LIG3-206ENST00000586058 SP140LQ9H930 580 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 MARCH7Q9H992 704 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 RNF122Q9H9V4 155 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 TUBD1Q9UJT1 453 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 TP53TG5Q9Y2B4 290 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 LIPGQ9Y5X9 500 aa5.5□□□□□ -1.53
LIG3-206ENST00000586058 IGKV3D-15A0A087WSY6 115 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 ARPC4-TTLL3A0A0A6YYG9 625 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 TMEM212A6NML5 194 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 ZNF716A6NP11 495 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 LOC110117498-PIK3R3F6TDL0 507 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 J3QRE1 110 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 DCTN6O00399 190 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 CASKO14936 926 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 DHHO43323 396 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 WDR1O75083 606 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 RPP14O95059 124 aaKnown RBP5.49□□□□□ -1.53
LIG3-206ENST00000586058 TFP02787 698 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 TPOP07202 933 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 YES1P07947 543 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 UBCP0CG48 685 aaKnown RBP5.49□□□□□ -1.53
LIG3-206ENST00000586058 OR8G3PP0DMU2 310 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 NR4A1P22736 598 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 CFL1P23528 166 aaKnown RBP5.49□□□□□ -1.53
LIG3-206ENST00000586058 TGFBR2P37173 567 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 RANBP1P43487 201 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 TGM4P49221 684 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 SELENOPP49908 381 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 P2RY4P51582 365 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 CASP6P55212 293 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 OR12D2P58182 307 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 VBP1P61758 197 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 LSM6P62312 80 aaKnown RBP5.49□□□□□ -1.53
LIG3-206ENST00000586058 SIRPAP78324 504 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 MRPS34P82930 218 aaKnown RBP5.49□□□□□ -1.53
LIG3-206ENST00000586058 SLC3A1Q07837 685 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 NFATC3Q12968 1075 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 TPBGQ13641 420 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 CDK5R1Q15078 307 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 STK11Q15831 433 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 TBR1Q16650 682 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 SLC36A2Q495M3 483 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 YIF1BQ5BJH7 314 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 TEX30Q5JUR7 227 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 BCL2L15Q5TBC7 163 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 FOXB2Q5VYV0 432 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 OR7E24Q6IFN5 339 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 DEGS2Q6QHC5 323 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 LUZP2Q86TE4 346 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 COMMD2Q86X83 199 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 CROCCP3Q8IVE0 287 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 C20orf196Q8IYI0 205 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 ZNF676Q8N7Q3 588 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 TEX19Q8NA77 164 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 GJC3Q8NFK1 279 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 OR5AK2Q8NH90 309 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 FNDC9Q8TBE3 224 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 CPT1CQ8TCG5 803 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 ABHD3Q8WU67 409 aa5.49□□□□□ -1.53
LIG3-206ENST00000586058 EXTL1Q92935 676 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms