RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 HTR3EA5X5Y0 456 aa17.49■□□□□ 0.39
SHMT1-209ENST00000582653 EFCAB9A8MZ26 197 aa17.49■□□□□ 0.39
SHMT1-209ENST00000582653 WNT9BO14905 357 aa17.49■□□□□ 0.39
SHMT1-209ENST00000582653 IGHMP01871 453 aa17.49■□□□□ 0.39
SHMT1-209ENST00000582653 STOMP27105 288 aa17.49■□□□□ 0.39
SHMT1-209ENST00000582653 NUDT2P50583 147 aa17.49■□□□□ 0.39
SHMT1-209ENST00000582653 KLF3P57682 345 aaPredicted RBP17.49■□□□□ 0.39
SHMT1-209ENST00000582653 TAF11Q15544 211 aa17.49■□□□□ 0.39
SHMT1-209ENST00000582653 TSEN54Q7Z6J9 526 aaKnown RBP17.49■□□□□ 0.39
SHMT1-209ENST00000582653 OR1J1Q8NGS3 322 aa17.49■□□□□ 0.39
SHMT1-209ENST00000582653 CLDND2Q8NHS1 167 aa17.49■□□□□ 0.39
SHMT1-209ENST00000582653 GEMIN6Q8WXD5 167 aaKnown RBP17.49■□□□□ 0.39
SHMT1-209ENST00000582653 GTF3AQ92664 365 aaKnown RBP17.49■□□□□ 0.39
SHMT1-209ENST00000582653 RBP7Q96R05 134 aa17.49■□□□□ 0.39
SHMT1-209ENST00000582653 ALG12Q9BV10 488 aa17.49■□□□□ 0.39
SHMT1-209ENST00000582653 LRMDAQ9H2I8 198 aa17.49■□□□□ 0.39
SHMT1-209ENST00000582653 MED4Q9NPJ6 270 aa17.49■□□□□ 0.39
SHMT1-209ENST00000582653 LOC100509620A0A075B734 347 aa17.48■□□□□ 0.39
SHMT1-209ENST00000582653 PRSS23O95084 383 aa17.48■□□□□ 0.39
SHMT1-209ENST00000582653 LAP3P28838 519 aa17.48■□□□□ 0.39
SHMT1-209ENST00000582653 SRP14P37108 136 aaKnown RBP17.48■□□□□ 0.39
SHMT1-209ENST00000582653 GPR4P46093 362 aa17.48■□□□□ 0.39
SHMT1-209ENST00000582653 CCL8P80075 99 aa17.48■□□□□ 0.39
SHMT1-209ENST00000582653 PSG4Q00888 419 aa17.48■□□□□ 0.39
SHMT1-209ENST00000582653 GLO1Q04760 184 aa17.48■□□□□ 0.39
SHMT1-209ENST00000582653 THEM4Q5T1C6 240 aa17.48■□□□□ 0.39
SHMT1-209ENST00000582653 FAM27BQ5VT28 67 aa17.48■□□□□ 0.39
SHMT1-209ENST00000582653 ZNF730Q6ZMV8 503 aa17.48■□□□□ 0.39
SHMT1-209ENST00000582653 ACOT11Q8WXI4 607 aaPredicted RBP17.48■□□□□ 0.39
SHMT1-209ENST00000582653 POM121L2Q96KW2 1035 aa17.48■□□□□ 0.39
SHMT1-209ENST00000582653 ELAC2Q9BQ52 826 aaKnown RBP17.48■□□□□ 0.39
SHMT1-209ENST00000582653 ZNF416Q9BWM5 594 aa17.48■□□□□ 0.39
SHMT1-209ENST00000582653 BCL2L14Q9BZR8 327 aa17.48■□□□□ 0.39
SHMT1-209ENST00000582653 HINT3Q9NQE9 182 aaKnown RBP17.48■□□□□ 0.39
SHMT1-209ENST00000582653 ZNF275Q9NSD4 429 aaPredicted RBP17.48■□□□□ 0.39
SHMT1-209ENST00000582653 SLCO1C1Q9NYB5 712 aa17.48■□□□□ 0.39
SHMT1-209ENST00000582653 C5orf49A4QMS7 147 aa17.47■□□□□ 0.39
SHMT1-209ENST00000582653 C17orf100A8MU93 164 aa17.47■□□□□ 0.39
SHMT1-209ENST00000582653 H7C1C5 153 aa17.47■□□□□ 0.39
SHMT1-209ENST00000582653 CDC42EP2O14613 210 aa17.47■□□□□ 0.39
SHMT1-209ENST00000582653 TCF21O43680 179 aa17.47■□□□□ 0.39
SHMT1-209ENST00000582653 CDC14BO60729 498 aa17.47■□□□□ 0.39
SHMT1-209ENST00000582653 WNT5AP41221 380 aa17.47■□□□□ 0.39
SHMT1-209ENST00000582653 LCN6P62502 163 aa17.47■□□□□ 0.39
SHMT1-209ENST00000582653 SPATA46Q5T0L3 261 aa17.47■□□□□ 0.39
SHMT1-209ENST00000582653 MBOAT2Q6ZWT7 520 aa17.47■□□□□ 0.39
SHMT1-209ENST00000582653 ZNF101Q8IZC7 436 aa17.47■□□□□ 0.39
SHMT1-209ENST00000582653 RNF113BQ8IZP6 322 aaKnown RBP17.47■□□□□ 0.39
SHMT1-209ENST00000582653 FAM162AQ96A26 154 aa17.47■□□□□ 0.39
SHMT1-209ENST00000582653 KCTD14Q9BQ13 255 aaPredicted RBP17.47■□□□□ 0.39
SHMT1-209ENST00000582653 NKIRAS2Q9NYR9 191 aa17.47■□□□□ 0.39
SHMT1-209ENST00000582653 A0A1W2PPL8 197 aa17.46■□□□□ 0.39
SHMT1-209ENST00000582653 PPIHO43447 177 aaKnown RBP17.46■□□□□ 0.39
SHMT1-209ENST00000582653 RP2O75695 350 aa17.46■□□□□ 0.39
SHMT1-209ENST00000582653 TFP02787 698 aa17.46■□□□□ 0.39
SHMT1-209ENST00000582653 SCG5P05408 212 aa17.46■□□□□ 0.39
SHMT1-209ENST00000582653 NR2C1P13056 603 aa17.46■□□□□ 0.39
SHMT1-209ENST00000582653 ZNF26P17031 533 aaPredicted RBP17.46■□□□□ 0.39
SHMT1-209ENST00000582653 MOGQ16653 247 aa17.46■□□□□ 0.39
SHMT1-209ENST00000582653 PCGF3Q3KNV8 242 aa17.46■□□□□ 0.39
SHMT1-209ENST00000582653 TMEM255AQ5JRV8 349 aa17.46■□□□□ 0.39
SHMT1-209ENST00000582653 TMEM154Q6P9G4 183 aa17.46■□□□□ 0.39
SHMT1-209ENST00000582653 HACD2Q6Y1H2 254 aa17.46■□□□□ 0.39
SHMT1-209ENST00000582653 GLCCI1Q86VQ1 547 aa17.46■□□□□ 0.39
SHMT1-209ENST00000582653 TMEM186Q96B77 213 aa17.46■□□□□ 0.39
SHMT1-209ENST00000582653 OR2H1Q9GZK4 316 aa17.46■□□□□ 0.39
SHMT1-209ENST00000582653 WNT5BQ9H1J7 359 aa17.46■□□□□ 0.39
SHMT1-209ENST00000582653 NMNAT1Q9HAN9 279 aaPredicted RBP17.46■□□□□ 0.39
SHMT1-209ENST00000582653 EGFL7Q9UHF1 273 aa17.46■□□□□ 0.39
SHMT1-209ENST00000582653 METRNQ9UJH8 293 aa17.46■□□□□ 0.39
SHMT1-209ENST00000582653 ADAM18Q9Y3Q7 739 aa17.46■□□□□ 0.39
SHMT1-209ENST00000582653 A6NIZ1 184 aa17.45■□□□□ 0.38
SHMT1-209ENST00000582653 FAM157AC9JC47 383 aa17.45■□□□□ 0.38
SHMT1-209ENST00000582653 CST2P09228 141 aa17.45■□□□□ 0.38
SHMT1-209ENST00000582653 RPL4P36578 427 aaKnown RBP17.45■□□□□ 0.38
SHMT1-209ENST00000582653 MPV17P39210 176 aa17.45■□□□□ 0.38
SHMT1-209ENST00000582653 CRYBB2P43320 205 aa17.45■□□□□ 0.38
SHMT1-209ENST00000582653 SLC9A3P48764 834 aa17.45■□□□□ 0.38
SHMT1-209ENST00000582653 GDI2P50395 445 aaKnown RBP17.45■□□□□ 0.38
SHMT1-209ENST00000582653 RAP1BP61224 184 aa17.45■□□□□ 0.38
SHMT1-209ENST00000582653 PSME3P61289 254 aa17.45■□□□□ 0.38
SHMT1-209ENST00000582653 LMO4P61968 165 aa17.45■□□□□ 0.38
SHMT1-209ENST00000582653 RAP1AP62834 184 aa17.45■□□□□ 0.38
SHMT1-209ENST00000582653 ANKDD1AQ495B1 522 aa17.45■□□□□ 0.38
SHMT1-209ENST00000582653 FOXL2NBQ6ZUU3 175 aa17.45■□□□□ 0.38
SHMT1-209ENST00000582653 TMPRSS11FQ6ZWK6 438 aa17.45■□□□□ 0.38
SHMT1-209ENST00000582653 RRM2BQ7LG56 351 aa17.45■□□□□ 0.38
SHMT1-209ENST00000582653 FNDC8Q8TC99 324 aa17.45■□□□□ 0.38
SHMT1-209ENST00000582653 SNX33Q8WV41 574 aa17.45■□□□□ 0.38
SHMT1-209ENST00000582653 MYLK2Q9H1R3 596 aa17.45■□□□□ 0.38
SHMT1-209ENST00000582653 HIF1ANQ9NWT6 349 aa17.45■□□□□ 0.38
SHMT1-209ENST00000582653 TREM2Q9NZC2 230 aa17.45■□□□□ 0.38
SHMT1-209ENST00000582653 ENPP4Q9Y6X5 453 aa17.45■□□□□ 0.38
SHMT1-209ENST00000582653 GMNCA6NCL1 334 aa17.44■□□□□ 0.38
SHMT1-209ENST00000582653 IGHV3-13P01766 116 aa17.44■□□□□ 0.38
SHMT1-209ENST00000582653 MSMBP08118 114 aa17.44■□□□□ 0.38
SHMT1-209ENST00000582653 GAAP10253 952 aa17.44■□□□□ 0.38
SHMT1-209ENST00000582653 DRD4P21917 467 aa17.44■□□□□ 0.38
SHMT1-209ENST00000582653 GUCA1AP43080 201 aaPredicted RBP17.44■□□□□ 0.38
SHMT1-209ENST00000582653 ENDOGQ14249 297 aaKnown RBP17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms