RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 IGHA1P01876 353 aa9.45□□□□□ -0.9
SS18-213ENST00000579640 TFP02787 698 aa9.45□□□□□ -0.9
SS18-213ENST00000579640 MRPL3P09001 348 aaKnown RBP9.45□□□□□ -0.9
SS18-213ENST00000579640 NAA10P41227 235 aaPredicted RBP9.45□□□□□ -0.9
SS18-213ENST00000579640 ADAM8P78325 824 aa9.45□□□□□ -0.9
SS18-213ENST00000579640 TGFBR3Q03167 851 aa9.45□□□□□ -0.9
SS18-213ENST00000579640 DBPQ10586 325 aaPredicted RBP9.45□□□□□ -0.9
SS18-213ENST00000579640 PCK2Q16822 640 aa9.45□□□□□ -0.9
SS18-213ENST00000579640 ZNF773Q6PK81 442 aa9.45□□□□□ -0.9
SS18-213ENST00000579640 SLC35F2Q8IXU6 374 aa9.45□□□□□ -0.9
SS18-213ENST00000579640 ZNF843Q8N446 348 aa9.45□□□□□ -0.9
SS18-213ENST00000579640 ACBD7Q8N6N7 88 aa9.45□□□□□ -0.9
SS18-213ENST00000579640 ZNF454Q8N9F8 522 aa9.45□□□□□ -0.9
SS18-213ENST00000579640 OR4F15Q8NGB8 312 aa9.45□□□□□ -0.9
SS18-213ENST00000579640 OR6N2Q8NGY6 317 aa9.45□□□□□ -0.9
SS18-213ENST00000579640 SIGLEC11Q96RL6 698 aa9.45□□□□□ -0.9
SS18-213ENST00000579640 RHNO1Q9BSD3 238 aa9.45□□□□□ -0.9
SS18-213ENST00000579640 WDR76Q9H967 626 aa9.45□□□□□ -0.9
SS18-213ENST00000579640 PAK1IP1Q9NWT1 392 aaPredicted RBP9.45□□□□□ -0.9
SS18-213ENST00000579640 CHCHD3Q9NX63 227 aaKnown RBP9.45□□□□□ -0.9
SS18-213ENST00000579640 TAS2R16Q9NYV7 291 aa9.45□□□□□ -0.9
SS18-213ENST00000579640 EXOSC1Q9Y3B2 195 aaKnown RBP9.45□□□□□ -0.9
SS18-213ENST00000579640 SNX5Q9Y5X3 404 aa9.45□□□□□ -0.9
SS18-213ENST00000579640 EIF4E1BA6NMX2 242 aaKnown RBP9.45□□□□□ -0.9
SS18-213ENST00000579640 ZNF670-ZNF695F2Z2N8 137 aa9.45□□□□□ -0.9
SS18-213ENST00000579640 ZNF593O00488 134 aaPredicted RBP9.45□□□□□ -0.9
SS18-213ENST00000579640 SELENOFO60613 162 aa9.45□□□□□ -0.9
SS18-213ENST00000579640 FARS2O95363 451 aaKnown RBP9.45□□□□□ -0.9
SS18-213ENST00000579640 GPANK1O95872 356 aa9.45□□□□□ -0.9
SS18-213ENST00000579640 RPSAP08865 295 aaKnown RBP9.45□□□□□ -0.9
SS18-213ENST00000579640 MYL12AP19105 171 aa9.45□□□□□ -0.9
SS18-213ENST00000579640 CDAP32320 146 aa9.45□□□□□ -0.9
SS18-213ENST00000579640 P2RY6Q15077 328 aa9.45□□□□□ -0.9
SS18-213ENST00000579640 SGCAQ16586 387 aa9.45□□□□□ -0.9
SS18-213ENST00000579640 FAM27BQ5VT28 67 aa9.45□□□□□ -0.9
SS18-213ENST00000579640 LYPD4Q6UWN0 246 aa9.45□□□□□ -0.9
SS18-213ENST00000579640 MRGPRGQ86SM5 289 aa9.45□□□□□ -0.9
SS18-213ENST00000579640 SVOPQ8N4V2 548 aa9.45□□□□□ -0.9
SS18-213ENST00000579640 TSPAN14Q8NG11 270 aa9.45□□□□□ -0.9
SS18-213ENST00000579640 OR10H4Q8NGA5 316 aa9.45□□□□□ -0.9
SS18-213ENST00000579640 NABP1Q96AH0 204 aa9.45□□□□□ -0.9
SS18-213ENST00000579640 ZNF837Q96EG3 531 aaPredicted RBP9.45□□□□□ -0.9
SS18-213ENST00000579640 MRPL48Q96GC5 212 aaKnown RBP9.45□□□□□ -0.9
SS18-213ENST00000579640 FOXN4Q96NZ1 517 aa9.45□□□□□ -0.9
SS18-213ENST00000579640 CDADC1Q9BWV3 514 aa9.45□□□□□ -0.9
SS18-213ENST00000579640 CDCA4Q9BXL8 241 aa9.45□□□□□ -0.9
SS18-213ENST00000579640 ERVK-18Q9QC07 812 aa9.45□□□□□ -0.9
SS18-213ENST00000579640 POLR1DQ9Y2S0 133 aa9.45□□□□□ -0.9
SS18-213ENST00000579640 FREM1Q5H8C1 2179 aa9.44□□□□□ -0.9
SS18-213ENST00000579640 INTS1Q8N201 2190 aaKnown RBP9.44□□□□□ -0.9
SS18-213ENST00000579640 C12orf71A8MTZ7 269 aa9.44□□□□□ -0.9
SS18-213ENST00000579640 APOL3O95236 402 aa9.44□□□□□ -0.9
SS18-213ENST00000579640 MPZL1O95297 269 aa9.44□□□□□ -0.9
SS18-213ENST00000579640 CST2P09228 141 aa9.44□□□□□ -0.9
SS18-213ENST00000579640 SPARCP09486 303 aa9.44□□□□□ -0.9
SS18-213ENST00000579640 OR8G3PP0DMU2 310 aa9.44□□□□□ -0.9
SS18-213ENST00000579640 COX5AP20674 150 aa9.44□□□□□ -0.9
SS18-213ENST00000579640 ARF1P84077 181 aaKnown RBP9.44□□□□□ -0.9
SS18-213ENST00000579640 SOWAHCQ53LP3 525 aaPredicted RBP9.44□□□□□ -0.9
SS18-213ENST00000579640 SLC18B1Q6NT16 456 aa9.44□□□□□ -0.9
SS18-213ENST00000579640 ZNF813Q6ZN06 617 aa9.44□□□□□ -0.9
SS18-213ENST00000579640 DPPA2Q7Z7J5 298 aa9.44□□□□□ -0.9
SS18-213ENST00000579640 SYT9Q86SS6 491 aa9.44□□□□□ -0.9
SS18-213ENST00000579640 CDC20BQ86Y33 519 aa9.44□□□□□ -0.9
SS18-213ENST00000579640 EGFL6Q8IUX8 553 aa9.44□□□□□ -0.9
SS18-213ENST00000579640 GABRG1Q8N1C3 465 aa9.44□□□□□ -0.9
SS18-213ENST00000579640 SLC22A24Q8N4F4 322 aa9.44□□□□□ -0.9
SS18-213ENST00000579640 ZNF610Q8N9Z0 462 aa9.44□□□□□ -0.9
SS18-213ENST00000579640 C1orf162Q8NEQ5 155 aaPredicted RBP9.44□□□□□ -0.9
SS18-213ENST00000579640 OTOSQ8NHW6 89 aa9.44□□□□□ -0.9
SS18-213ENST00000579640 ASB5Q8WWX0 329 aa9.44□□□□□ -0.9
SS18-213ENST00000579640 BOD1Q96IK1 185 aa9.44□□□□□ -0.9
SS18-213ENST00000579640 CCDC90BQ9GZT6 254 aa9.44□□□□□ -0.9
SS18-213ENST00000579640 OPN3Q9H1Y3 402 aaPredicted RBP9.44□□□□□ -0.9
SS18-213ENST00000579640 KCNN2Q9H2S1 579 aa9.44□□□□□ -0.9
SS18-213ENST00000579640 LAMP5Q9UJQ1 280 aa9.44□□□□□ -0.9
SS18-213ENST00000579640 NBEAQ8NFP9 2946 aa9.44□□□□□ -0.9
SS18-213ENST00000579640 RP1L1Q8IWN7 2480 aaPredicted RBP9.43□□□□□ -0.9
SS18-213ENST00000579640 DAPL1A0PJW8 107 aa9.43□□□□□ -0.9
SS18-213ENST00000579640 MT-ND2P03891 347 aa9.43□□□□□ -0.9
SS18-213ENST00000579640 SCG5P05408 212 aa9.43□□□□□ -0.9
SS18-213ENST00000579640 ITGA5P08648 1049 aa9.43□□□□□ -0.9
SS18-213ENST00000579640 HTR1AP08908 422 aa9.43□□□□□ -0.9
SS18-213ENST00000579640 HOXB1P14653 301 aaPredicted RBP9.43□□□□□ -0.9
SS18-213ENST00000579640 B4GALT1P15291 398 aa9.43□□□□□ -0.9
SS18-213ENST00000579640 ALOX5APP20292 161 aa9.43□□□□□ -0.9
SS18-213ENST00000579640 BMP5P22003 454 aa9.43□□□□□ -0.9
SS18-213ENST00000579640 IGHV1-2P23083 117 aa9.43□□□□□ -0.9
SS18-213ENST00000579640 C21orf33P30042 268 aaPredicted RBP9.43□□□□□ -0.9
SS18-213ENST00000579640 PCBD1P61457 104 aa9.43□□□□□ -0.9
SS18-213ENST00000579640 TUBA4AP68366 448 aa9.43□□□□□ -0.9
SS18-213ENST00000579640 MVKQ03426 396 aa9.43□□□□□ -0.9
SS18-213ENST00000579640 AQP6Q13520 282 aa9.43□□□□□ -0.9
SS18-213ENST00000579640 MEP1BQ16820 701 aa9.43□□□□□ -0.9
SS18-213ENST00000579640 C4orf17Q53FE4 359 aa9.43□□□□□ -0.9
SS18-213ENST00000579640 ANKRD16Q6P6B7 361 aa9.43□□□□□ -0.9
SS18-213ENST00000579640 DPY19L4Q7Z388 723 aa9.43□□□□□ -0.9
SS18-213ENST00000579640 CCDC36Q8IYA8 594 aa9.43□□□□□ -0.9
SS18-213ENST00000579640 OR1K1Q8NGR3 316 aa9.43□□□□□ -0.9
SS18-213ENST00000579640 OR2AJ1Q8NGZ0 328 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms