RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 DGUOKQ16854 277 aa9.03□□□□□ -0.96
SS18-210ENST00000578700 TMEM176BQ3YBM2 270 aaPredicted RBP9.03□□□□□ -0.96
SS18-210ENST00000578700 ZNF362Q5T0B9 420 aaPredicted RBP9.03□□□□□ -0.96
SS18-210ENST00000578700 PDSS1Q5T2R2 415 aa9.03□□□□□ -0.96
SS18-210ENST00000578700 TMEM225Q6GV28 225 aa9.03□□□□□ -0.96
SS18-210ENST00000578700 SEM1Q6ZVN7 128 aa9.03□□□□□ -0.96
SS18-210ENST00000578700 USP43Q70EL4 1123 aa9.03□□□□□ -0.96
SS18-210ENST00000578700 TUBA1AQ71U36 451 aa9.03□□□□□ -0.96
SS18-210ENST00000578700 FAM122BQ7Z309 247 aa9.03□□□□□ -0.96
SS18-210ENST00000578700 LHFPL3Q86UP9 236 aa9.03□□□□□ -0.96
SS18-210ENST00000578700 OR2T27Q8NH04 317 aa9.03□□□□□ -0.96
SS18-210ENST00000578700 POC1BQ8TC44 478 aa9.03□□□□□ -0.96
SS18-210ENST00000578700 GATAD2BQ8WXI9 593 aa9.03□□□□□ -0.96
SS18-210ENST00000578700 DNAJA3Q96EY1 480 aa9.03□□□□□ -0.96
SS18-210ENST00000578700 GNRHR2Q96P88 292 aa9.03□□□□□ -0.96
SS18-210ENST00000578700 MNTQ99583 582 aa9.03□□□□□ -0.96
SS18-210ENST00000578700 NAA11Q9BSU3 229 aaPredicted RBP9.03□□□□□ -0.96
SS18-210ENST00000578700 ALG8Q9BVK2 526 aa9.03□□□□□ -0.96
SS18-210ENST00000578700 HCAR1Q9BXC0 346 aa9.03□□□□□ -0.96
SS18-210ENST00000578700 SLC6A15Q9H2J7 730 aa9.03□□□□□ -0.96
SS18-210ENST00000578700 RERGLQ9H628 205 aa9.03□□□□□ -0.96
SS18-210ENST00000578700 TMEM185BQ9H7F4 350 aa9.03□□□□□ -0.96
SS18-210ENST00000578700 ZFP64Q9NPA5 681 aa9.03□□□□□ -0.96
SS18-210ENST00000578700 TRIM36Q9NQ86 728 aa9.03□□□□□ -0.96
SS18-210ENST00000578700 SSR3Q9UNL2 185 aa9.03□□□□□ -0.96
SS18-210ENST00000578700 LSM2Q9Y333 95 aaKnown RBP9.03□□□□□ -0.96
SS18-210ENST00000578700 ARID1AO14497 2285 aa9.03□□□□□ -0.96
SS18-210ENST00000578700 NCKAP5O14513 1909 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 A0A1W2PPW3 197 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 OR6C68A6NDL8 312 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 CCDC182A6NF36 153 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 SHISA8B8ZZ34 492 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 EEF1E1-BLOC1S5C9J1V9 151 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 ZNF670-ZNF695F2Z2N8 137 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 EEF1E1O43324 174 aaKnown RBP9.02□□□□□ -0.97
SS18-210ENST00000578700 AHCYL1O43865 530 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 TRAPPC6AO75865 159 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 IL2RAP01589 272 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 HEXAP06865 529 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 NR4A1P22736 598 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 GADD45AP24522 165 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 GDF1P27539 372 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 CRABP1P29762 137 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 SFTPDP35247 375 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 SOX6P35712 828 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 TGFBR2P37173 567 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 CDKN2AP42771 156 aaKnown RBP9.02□□□□□ -0.97
SS18-210ENST00000578700 LSM3P62310 102 aaKnown RBP9.02□□□□□ -0.97
SS18-210ENST00000578700 RAC1P63000 192 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 POU3F1Q03052 451 aaPredicted RBP9.02□□□□□ -0.97
SS18-210ENST00000578700 GALEQ14376 348 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 GGTLC2Q14390 218 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 DAZAP2Q15038 168 aaPredicted RBP9.02□□□□□ -0.97
SS18-210ENST00000578700 CTF1Q16619 201 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 MESTQ5EB52 335 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 SLC16A12Q6ZSM3 486 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 PXKQ7Z7A4 578 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 UEVLDQ8IX04 471 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 SLC35F2Q8IXU6 374 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 NAXEQ8NCW5 288 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 HAVCR2Q8TDQ0 301 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 SNX33Q8WV41 574 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 ZMYND19Q96E35 227 aaPredicted RBP9.02□□□□□ -0.97
SS18-210ENST00000578700 ARL5BQ96KC2 179 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 OPALINQ96PE5 141 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 TBX5Q99593 518 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 CHCHD6Q9BRQ6 235 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 ALG12Q9BV10 488 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 NMNAT2Q9BZQ4 307 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 ADGRL4Q9HBW9 690 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 SRA1Q9HD15 236 aaKnown RBP9.02□□□□□ -0.97
SS18-210ENST00000578700 EXOSC4Q9NPD3 245 aaKnown RBP9.02□□□□□ -0.97
SS18-210ENST00000578700 TIGARQ9NQ88 270 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 ASB6Q9NWX5 421 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 NDUFB11Q9NX14 153 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 BABAM2Q9NXR7 383 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 STUB1Q9UNE7 303 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 MRPS18CQ9Y3D5 142 aaKnown RBP9.02□□□□□ -0.97
SS18-210ENST00000578700 TMEM14AQ9Y6G1 99 aa9.02□□□□□ -0.97
SS18-210ENST00000578700 A0A1W2PNV4 684 aa9.01□□□□□ -0.97
SS18-210ENST00000578700 OR2M5A3KFT3 312 aa9.01□□□□□ -0.97
SS18-210ENST00000578700 PRSS37A4D1T9 235 aa9.01□□□□□ -0.97
SS18-210ENST00000578700 TRIM64BA6NI03 449 aa9.01□□□□□ -0.97
SS18-210ENST00000578700 FAM171A2A8MVW0 826 aa9.01□□□□□ -0.97
SS18-210ENST00000578700 PHYHO14832 338 aa9.01□□□□□ -0.97
SS18-210ENST00000578700 DNPH1O43598 174 aa9.01□□□□□ -0.97
SS18-210ENST00000578700 AKR7A3O95154 331 aa9.01□□□□□ -0.97
SS18-210ENST00000578700 VAMP5O95183 116 aa9.01□□□□□ -0.97
SS18-210ENST00000578700 PMS2P2O95744 297 aa9.01□□□□□ -0.97
SS18-210ENST00000578700 HLA-DQA2P01906 255 aa9.01□□□□□ -0.97
SS18-210ENST00000578700 TACSTD2P09758 323 aa9.01□□□□□ -0.97
SS18-210ENST00000578700 CLUP10909 449 aa9.01□□□□□ -0.97
SS18-210ENST00000578700 IMPDH2P12268 514 aa9.01□□□□□ -0.97
SS18-210ENST00000578700 CPEP16870 476 aa9.01□□□□□ -0.97
SS18-210ENST00000578700 GBX2P52951 348 aaPredicted RBP9.01□□□□□ -0.97
SS18-210ENST00000578700 VBP1P61758 197 aa9.01□□□□□ -0.97
SS18-210ENST00000578700 ACSM1Q08AH1 577 aa9.01□□□□□ -0.97
SS18-210ENST00000578700 DYNC1I2Q13409 638 aaKnown RBP9.01□□□□□ -0.97
SS18-210ENST00000578700 LSAMPQ13449 338 aa9.01□□□□□ -0.97
SS18-210ENST00000578700 GPR50Q13585 617 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms