RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 PNLIPP16233 465 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 IL11P20809 199 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 SUMO3P55854 103 aaPredicted RBP9.05□□□□□ -0.96
VPS53-220ENST00000576149 DLX5P56178 289 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 GLO1Q04760 184 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 PUDPQ08623 228 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 PLA2G7Q13093 441 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 MS4A18Q3C1V0 323 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 GLB1L2Q8IW92 636 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 KDM8Q8N371 416 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 ZNF454Q8N9F8 522 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 ZNF248Q8NDW4 579 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 THAP3Q8WTV1 239 aaPredicted RBP9.05□□□□□ -0.96
VPS53-220ENST00000576149 HGDQ93099 445 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 NKIRAS2Q9NYR9 191 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 PTTG3PQ9NZH4 202 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 FLVCR2Q9UPI3 526 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 SLC22A13Q9Y226 551 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 COA3Q9Y2R0 106 aaPredicted RBP9.05□□□□□ -0.96
VPS53-220ENST00000576149 CPAMD8Q8IZJ3 1885 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 MEIKINA0A087WXM9 373 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 A6NIZ1 184 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 TMEM200CA6NKL6 621 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 TTLL8A6PVC2 850 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 HPXP02790 462 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 CCKBRP32239 447 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 APOBEC1P41238 236 aaKnown RBP9.05□□□□□ -0.96
VPS53-220ENST00000576149 RIDAP52758 137 aaKnown RBP9.05□□□□□ -0.96
VPS53-220ENST00000576149 RAP1BP61224 184 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 RAP1AP62834 184 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 EIF2B1Q14232 305 aaKnown RBP9.05□□□□□ -0.96
VPS53-220ENST00000576149 LUZP2Q86TE4 346 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 MFSD8Q8NHS3 518 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 ZNF431Q8TF32 576 aaPredicted RBP9.05□□□□□ -0.96
VPS53-220ENST00000576149 HLA-CQ95604 372 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 PPP1R14AQ96A00 147 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 ARL5BQ96KC2 179 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 OR6C1Q96RD1 312 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 EDARQ9UNE0 448 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 VCANP13611 3396 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 A0A1B0GVI7 797 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 SSNA1O43805 119 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 PRAF2O60831 178 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 ALX3O95076 343 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 MPZL1O95297 269 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 TGM6O95932 706 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 ITGA5P08648 1049 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 DCTDP32321 178 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 PTGS2P35354 604 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 MFGE8Q08431 387 aaPredicted RBP9.04□□□□□ -0.96
VPS53-220ENST00000576149 MFSD13AQ14CX5 517 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 ASPHD2Q6ICH7 369 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 OR7E24Q6IFN5 339 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 GUSBP11Q6P575 273 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 ANKRD16Q6P6B7 361 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 H1FNTQ75WM6 255 aaPredicted RBP9.04□□□□□ -0.96
VPS53-220ENST00000576149 CATSPERDQ86XM0 798 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 OR51D1Q8NGF3 324 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 OR52N5Q8NH56 324 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 RNF138Q8WVD3 245 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 ASB10Q8WXI3 467 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 SNAPC3Q92966 411 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 DACT3Q96B18 629 aaPredicted RBP9.04□□□□□ -0.96
VPS53-220ENST00000576149 WDR77Q9BQA1 342 aaPredicted RBP9.04□□□□□ -0.96
VPS53-220ENST00000576149 B3GNT4Q9C0J1 378 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 OR10A4Q9H209 315 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 BEX1Q9HBH7 125 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 MED11Q9P086 117 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 FBXL3Q9UKT7 428 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 MGAT4AQ9UM21 535 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 LRP12Q9Y561 859 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 A0A0C4DFX4 3053 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 ALPK2Q86TB3 2170 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 A0A1B0GUH1 482 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 A0A1W2PQM1 296 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 CPED1A4D0V7 1026 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 NPIPB13A6NJU9 1138 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 NPIPB4C9JG80 1138 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 ZNF208O43345 1280 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 SCRG1O75711 98 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 WNT11O96014 354 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 DCNP07585 359 aaKnown RBP9.04□□□□□ -0.96
VPS53-220ENST00000576149 IFNGR1P15260 489 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 NAGAP17050 411 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 EPHA8P29322 1005 aaPredicted RBP9.04□□□□□ -0.96
VPS53-220ENST00000576149 VEGFCP49767 419 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 DAP3P51398 398 aaKnown RBP9.04□□□□□ -0.96
VPS53-220ENST00000576149 MAP2K6P52564 334 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 ZP1P60852 638 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 DCDP81605 110 aaKnown RBP9.04□□□□□ -0.96
VPS53-220ENST00000576149 OR7A5Q15622 319 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 PAPD4Q6PIY7 484 aaKnown RBP9.04□□□□□ -0.96
VPS53-220ENST00000576149 ARSKQ6UWY0 536 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 SEZ6L2Q6UXD5 910 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 ZNF782Q6ZMW2 699 aaPredicted RBP9.04□□□□□ -0.96
VPS53-220ENST00000576149 ZNF767PQ75MW2 155 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 NDUFAF7Q7L592 441 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 MDGA2Q7Z553 956 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 SLC26A10Q8NG04 563 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 OR11H4Q8NGC9 324 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms