RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 HGFACQ04756 655 aa7□□□□□ -1.29
VPS53-214ENST00000572607 CARTPTQ16568 116 aa7□□□□□ -1.29
VPS53-214ENST00000572607 FXNQ16595 210 aa7□□□□□ -1.29
VPS53-214ENST00000572607 SWI5Q1ZZU3 235 aa7□□□□□ -1.29
VPS53-214ENST00000572607 MTX3Q5HYI7 312 aa7□□□□□ -1.29
VPS53-214ENST00000572607 TBPL2Q6SJ96 375 aa7□□□□□ -1.29
VPS53-214ENST00000572607 SHISA2Q6UWI4 295 aa7□□□□□ -1.29
VPS53-214ENST00000572607 UNQ6126/PRO20091Q6UXV3 157 aa7□□□□□ -1.29
VPS53-214ENST00000572607 MYPOPQ86VE0 399 aaPredicted RBP7□□□□□ -1.29
VPS53-214ENST00000572607 LRRC18Q8N456 261 aa7□□□□□ -1.29
VPS53-214ENST00000572607 FITM2Q8N6M3 262 aa7□□□□□ -1.29
VPS53-214ENST00000572607 ZNF525Q8N782 197 aa7□□□□□ -1.29
VPS53-214ENST00000572607 ARIH2OSQ8N7S6 290 aa7□□□□□ -1.29
VPS53-214ENST00000572607 SLC30A7Q8NEW0 376 aa7□□□□□ -1.29
VPS53-214ENST00000572607 OR52J3Q8NH60 311 aa7□□□□□ -1.29
VPS53-214ENST00000572607 SLC7A13Q8TCU3 470 aa7□□□□□ -1.29
VPS53-214ENST00000572607 HTRA1Q92743 480 aa7□□□□□ -1.29
VPS53-214ENST00000572607 POP5Q969H6 163 aaKnown RBP7□□□□□ -1.29
VPS53-214ENST00000572607 RSRC1Q96IZ7 334 aaKnown RBP7□□□□□ -1.29
VPS53-214ENST00000572607 ZNF570Q96NI8 536 aa7□□□□□ -1.29
VPS53-214ENST00000572607 TSPAN32Q96QS1 320 aa7□□□□□ -1.29
VPS53-214ENST00000572607 SEPHS2Q99611 448 aa7□□□□□ -1.29
VPS53-214ENST00000572607 PIMREGQ9BSJ6 248 aa7□□□□□ -1.29
VPS53-214ENST00000572607 SSBP4Q9BWG4 385 aaPredicted RBP7□□□□□ -1.29
VPS53-214ENST00000572607 MUC13Q9H3R2 512 aa7□□□□□ -1.29
VPS53-214ENST00000572607 ZNF224Q9NZL3 707 aa7□□□□□ -1.29
VPS53-214ENST00000572607 TRBV4-1A0A0J9YWV2 114 aa6.99□□□□□ -1.29
VPS53-214ENST00000572607 A0A1W2PPW3 197 aa6.99□□□□□ -1.29
VPS53-214ENST00000572607 C12orf71A8MTZ7 269 aa6.99□□□□□ -1.29
VPS53-214ENST00000572607 NDUFS8O00217 210 aa6.99□□□□□ -1.29
VPS53-214ENST00000572607 CDC42EP2O14613 210 aa6.99□□□□□ -1.29
VPS53-214ENST00000572607 AHCYL1O43865 530 aa6.99□□□□□ -1.29
VPS53-214ENST00000572607 OR10H3O60404 316 aa6.99□□□□□ -1.29
VPS53-214ENST00000572607 DIRAS1O95057 198 aa6.99□□□□□ -1.29
VPS53-214ENST00000572607 LCKP06239 509 aa6.99□□□□□ -1.29
VPS53-214ENST00000572607 ZNF35P13682 527 aa6.99□□□□□ -1.29
VPS53-214ENST00000572607 CCNOP22674 350 aa6.99□□□□□ -1.29
VPS53-214ENST00000572607 MSX2P35548 267 aaPredicted RBP6.99□□□□□ -1.29
VPS53-214ENST00000572607 RAD52P43351 418 aa6.99□□□□□ -1.29
VPS53-214ENST00000572607 EVX1P49640 407 aa6.99□□□□□ -1.29
VPS53-214ENST00000572607 RPS6KA3P51812 740 aa6.99□□□□□ -1.29
VPS53-214ENST00000572607 ZNF133P52736 654 aaPredicted RBP6.99□□□□□ -1.29
VPS53-214ENST00000572607 VLDLRP98155 873 aa6.99□□□□□ -1.29
VPS53-214ENST00000572607 FMODQ06828 376 aa6.99□□□□□ -1.29
VPS53-214ENST00000572607 MST1LQ2TV78 715 aa6.99□□□□□ -1.29
VPS53-214ENST00000572607 FAM27BQ5VT28 67 aa6.99□□□□□ -1.29
VPS53-214ENST00000572607 GPR139Q6DWJ6 353 aa6.99□□□□□ -1.29
VPS53-214ENST00000572607 RGS7BPQ6MZT1 257 aaPredicted RBP6.99□□□□□ -1.29
VPS53-214ENST00000572607 DNM1P34Q6PK57 102 aa6.99□□□□□ -1.29
VPS53-214ENST00000572607 SLC25A47Q6Q0C1 308 aa6.99□□□□□ -1.29
VPS53-214ENST00000572607 SVOPLQ8N434 492 aa6.99□□□□□ -1.29
VPS53-214ENST00000572607 FAM86B1Q8N7N1 296 aa6.99□□□□□ -1.29
VPS53-214ENST00000572607 LRRC75AQ8NAA5 344 aa6.99□□□□□ -1.29
VPS53-214ENST00000572607 ZNF519Q8TB69 540 aa6.99□□□□□ -1.29
VPS53-214ENST00000572607 NEU4Q8WWR8 484 aaPredicted RBP6.99□□□□□ -1.29
VPS53-214ENST00000572607 MRPL24Q96A35 216 aaKnown RBP6.99□□□□□ -1.29
VPS53-214ENST00000572607 C7orf34Q96L11 122 aa6.99□□□□□ -1.29
VPS53-214ENST00000572607 LRGUKQ96M69 825 aa6.99□□□□□ -1.29
VPS53-214ENST00000572607 SORCS2Q96PQ0 1159 aa6.99□□□□□ -1.29
VPS53-214ENST00000572607 MS4A5Q9H3V2 200 aa6.99□□□□□ -1.29
VPS53-214ENST00000572607 ACTR3BQ9P1U1 418 aa6.99□□□□□ -1.29
VPS53-214ENST00000572607 EIF3KQ9UBQ5 218 aaKnown RBP6.99□□□□□ -1.29
VPS53-214ENST00000572607 CD300AQ9UGN4 299 aa6.99□□□□□ -1.29
VPS53-214ENST00000572607 GPR160Q9UJ42 338 aa6.99□□□□□ -1.29
VPS53-214ENST00000572607 ADAM21Q9UKJ8 722 aa6.99□□□□□ -1.29
VPS53-214ENST00000572607 ARID1AO14497 2285 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 IGHV4-30-2A0A087WSY4 118 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 TEX13CA0A0J9YWL9 993 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 SH3PXD2BA1X283 911 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 H7C1C5 153 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 M0R233 179 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 GPRIN2O60269 458 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 RGS9O75916 674 aaPredicted RBP6.98□□□□□ -1.29
VPS53-214ENST00000572607 KRT36O76013 467 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 SNAP29O95721 258 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 MT-ND5P03915 603 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 SEMG1P04279 462 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 CST2P09228 141 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 ZNF32P17041 273 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 MSR1P21757 451 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 FUT4P22083 530 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 LAP3P28838 519 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 PCSK6P29122 969 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 SDHAP31040 664 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 RRM2P31350 389 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 SLC6A6P31641 620 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 CDAP32320 146 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 OMPP47874 163 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 LIMS1P48059 325 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 GDI2P50395 445 aaKnown RBP6.98□□□□□ -1.29
VPS53-214ENST00000572607 LCN6P62502 163 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 KRR1Q13601 381 aaKnown RBP6.98□□□□□ -1.29
VPS53-214ENST00000572607 MOGQ16653 247 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 NKPD1Q17RQ9 610 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 PABPC1L2AQ5JQF8 200 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 ARL9Q6T311 187 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 CYP2R1Q6VVX0 501 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 DPY19L2P2Q6ZN68 376 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 DNM1P46Q6ZS02 220 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 TSEN54Q7Z6J9 526 aaKnown RBP6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms