RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 NPEPL1Q8NDH3 523 aa17.98■□□□□ 0.47
VPS53-210ENST00000571456 OR4Q3Q8NH05 313 aa17.98■□□□□ 0.47
VPS53-210ENST00000571456 RDH12Q96NR8 316 aa17.98■□□□□ 0.47
VPS53-210ENST00000571456 NMNAT3Q96T66 252 aa17.98■□□□□ 0.47
VPS53-210ENST00000571456 TMEFF2Q9UIK5 374 aaPredicted RBP17.98■□□□□ 0.47
VPS53-210ENST00000571456 ZANQ9Y493 2812 aa17.98■□□□□ 0.47
VPS53-210ENST00000571456 SLC16A7O60669 478 aa17.97■□□□□ 0.47
VPS53-210ENST00000571456 SLC2A10O95528 541 aa17.97■□□□□ 0.47
VPS53-210ENST00000571456 B4GALT1P15291 398 aa17.97■□□□□ 0.47
VPS53-210ENST00000571456 PTAFRP25105 342 aa17.97■□□□□ 0.47
VPS53-210ENST00000571456 ARR3P36575 388 aa17.97■□□□□ 0.47
VPS53-210ENST00000571456 SLC25A1P53007 311 aa17.97■□□□□ 0.47
VPS53-210ENST00000571456 FMODQ06828 376 aa17.97■□□□□ 0.47
VPS53-210ENST00000571456 PTGES3Q15185 160 aaKnown RBP17.97■□□□□ 0.47
VPS53-210ENST00000571456 HIKESHIQ53FT3 197 aa17.97■□□□□ 0.47
VPS53-210ENST00000571456 FAM27BQ5VT28 67 aa17.97■□□□□ 0.47
VPS53-210ENST00000571456 TMEM108Q6UXF1 575 aa17.97■□□□□ 0.47
VPS53-210ENST00000571456 SYT9Q86SS6 491 aa17.97■□□□□ 0.47
VPS53-210ENST00000571456 WFDC8Q8IUA0 241 aa17.97■□□□□ 0.47
VPS53-210ENST00000571456 GLB1L2Q8IW92 636 aa17.97■□□□□ 0.47
VPS53-210ENST00000571456 CBR4Q8N4T8 237 aa17.97■□□□□ 0.47
VPS53-210ENST00000571456 PACRGLQ8N7B6 248 aa17.97■□□□□ 0.47
VPS53-210ENST00000571456 OR52N5Q8NH56 324 aa17.97■□□□□ 0.47
VPS53-210ENST00000571456 PLEKHA8Q96JA3 519 aa17.97■□□□□ 0.47
VPS53-210ENST00000571456 RADILQ96JH8 1075 aa17.97■□□□□ 0.47
VPS53-210ENST00000571456 NUAK2Q9H093 628 aa17.97■□□□□ 0.47
VPS53-210ENST00000571456 CLEC4MQ9H2X3 399 aaPredicted RBP17.97■□□□□ 0.47
VPS53-210ENST00000571456 UGT2A1Q9Y4X1 527 aa17.97■□□□□ 0.47
VPS53-210ENST00000571456 H7C1C5 153 aa17.96■□□□□ 0.47
VPS53-210ENST00000571456 EI24O14681 340 aa17.96■□□□□ 0.47
VPS53-210ENST00000571456 IGFBP1P08833 259 aaPredicted RBP17.96■□□□□ 0.47
VPS53-210ENST00000571456 CTLA4P16410 223 aa17.96■□□□□ 0.47
VPS53-210ENST00000571456 MSR1P21757 451 aa17.96■□□□□ 0.47
VPS53-210ENST00000571456 LAP3P28838 519 aa17.96■□□□□ 0.47
VPS53-210ENST00000571456 PCBD1P61457 104 aa17.96■□□□□ 0.47
VPS53-210ENST00000571456 LSM6P62312 80 aaKnown RBP17.96■□□□□ 0.47
VPS53-210ENST00000571456 LCN6P62502 163 aa17.96■□□□□ 0.47
VPS53-210ENST00000571456 NPRL3Q12980 569 aa17.96■□□□□ 0.47
VPS53-210ENST00000571456 SNTB1Q13884 538 aaKnown RBP17.96■□□□□ 0.47
VPS53-210ENST00000571456 ZNF362Q5T0B9 420 aaPredicted RBP17.96■□□□□ 0.47
VPS53-210ENST00000571456 SLC35F1Q5T1Q4 408 aa17.96■□□□□ 0.47
VPS53-210ENST00000571456 SDR9C7Q8NEX9 313 aa17.96■□□□□ 0.47
VPS53-210ENST00000571456 IL17RDQ8NFM7 739 aa17.96■□□□□ 0.47
VPS53-210ENST00000571456 NSMAFQ92636 917 aa17.96■□□□□ 0.47
VPS53-210ENST00000571456 ZC3HAV1LQ96H79 300 aaKnown RBP17.96■□□□□ 0.47
VPS53-210ENST00000571456 DDOQ99489 341 aa17.96■□□□□ 0.47
VPS53-210ENST00000571456 C1orf198Q9H425 327 aa17.96■□□□□ 0.47
VPS53-210ENST00000571456 FN3KQ9H479 309 aa17.96■□□□□ 0.47
VPS53-210ENST00000571456 CRNNQ9UBG3 495 aaPredicted RBP17.96■□□□□ 0.47
VPS53-210ENST00000571456 B9D1Q9UPM9 204 aa17.96■□□□□ 0.47
VPS53-210ENST00000571456 HEATR1Q9H583 2144 aaKnown RBP17.96■□□□□ 0.47
VPS53-210ENST00000571456 PRR14LQ5THK1 2151 aa17.96■□□□□ 0.46
VPS53-210ENST00000571456 A0A096LPE4 126 aa17.95■□□□□ 0.46
VPS53-210ENST00000571456 A0A1W2PPZ6 126 aa17.95■□□□□ 0.46
VPS53-210ENST00000571456 OR6C68A6NDL8 312 aa17.95■□□□□ 0.46
VPS53-210ENST00000571456 ZAR1LA6NP61 321 aa17.95■□□□□ 0.46
VPS53-210ENST00000571456 FAM171A2A8MVW0 826 aa17.95■□□□□ 0.46
VPS53-210ENST00000571456 IGKV3-15P01624 115 aa17.95■□□□□ 0.46
VPS53-210ENST00000571456 HRGP04196 525 aa17.95■□□□□ 0.46
VPS53-210ENST00000571456 CST2P09228 141 aa17.95■□□□□ 0.46
VPS53-210ENST00000571456 CBR1P16152 277 aa17.95■□□□□ 0.46
VPS53-210ENST00000571456 KCNMB1Q16558 191 aa17.95■□□□□ 0.46
VPS53-210ENST00000571456 GSG1Q2KHT4 349 aa17.95■□□□□ 0.46
VPS53-210ENST00000571456 SLX4IPQ5VYV7 408 aa17.95■□□□□ 0.46
VPS53-210ENST00000571456 TMEM53Q6P2H8 277 aa17.95■□□□□ 0.46
VPS53-210ENST00000571456 SLC16A14Q7RTX9 510 aa17.95■□□□□ 0.46
VPS53-210ENST00000571456 SLC37A3Q8NCC5 494 aa17.95■□□□□ 0.46
VPS53-210ENST00000571456 SEC61A2Q9H9S3 476 aa17.95■□□□□ 0.46
VPS53-210ENST00000571456 RPRD1BQ9NQG5 326 aaKnown RBP17.95■□□□□ 0.46
VPS53-210ENST00000571456 MOKQ9UQ07 419 aa17.95■□□□□ 0.46
VPS53-210ENST00000571456 IGLV1-36A0A0B4J1U3 117 aa17.94■□□□□ 0.46
VPS53-210ENST00000571456 A0A1W2PPL8 197 aa17.94■□□□□ 0.46
VPS53-210ENST00000571456 C12orf71A8MTZ7 269 aa17.94■□□□□ 0.46
VPS53-210ENST00000571456 CASQ2O14958 399 aaPredicted RBP17.94■□□□□ 0.46
VPS53-210ENST00000571456 SURF4O15260 269 aa17.94■□□□□ 0.46
VPS53-210ENST00000571456 PTHP01270 115 aa17.94■□□□□ 0.46
VPS53-210ENST00000571456 CAPZA2P47755 286 aa17.94■□□□□ 0.46
VPS53-210ENST00000571456 TRIP10Q15642 601 aa17.94■□□□□ 0.46
VPS53-210ENST00000571456 ACSM5Q6NUN0 579 aa17.94■□□□□ 0.46
VPS53-210ENST00000571456 SEZ6L2Q6UXD5 910 aa17.94■□□□□ 0.46
VPS53-210ENST00000571456 C22orf34Q6ZV56 151 aa17.94■□□□□ 0.46
VPS53-210ENST00000571456 SKA3Q8IX90 412 aa17.94■□□□□ 0.46
VPS53-210ENST00000571456 OR6V1Q8N148 313 aa17.94■□□□□ 0.46
VPS53-210ENST00000571456 NABP1Q96AH0 204 aa17.94■□□□□ 0.46
VPS53-210ENST00000571456 NMNAT2Q9BZQ4 307 aa17.94■□□□□ 0.46
VPS53-210ENST00000571456 VCXQ9H320 206 aa17.94■□□□□ 0.46
VPS53-210ENST00000571456 POLE4Q9NR33 117 aa17.94■□□□□ 0.46
VPS53-210ENST00000571456 RASSF1Q9NS23 344 aa17.94■□□□□ 0.46
VPS53-210ENST00000571456 B3GNT2Q9NY97 397 aa17.94■□□□□ 0.46
VPS53-210ENST00000571456 KCNG2Q9UJ96 466 aa17.94■□□□□ 0.46
VPS53-210ENST00000571456 IGKV1D-43A0A0B4J1Z2 117 aa17.93■□□□□ 0.46
VPS53-210ENST00000571456 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP17.93■□□□□ 0.46
VPS53-210ENST00000571456 DEFB108AA8MXU0 73 aa17.93■□□□□ 0.46
VPS53-210ENST00000571456 PRR23D1E9PI22 279 aaPredicted RBP17.93■□□□□ 0.46
VPS53-210ENST00000571456 PRODHO43272 600 aa17.93■□□□□ 0.46
VPS53-210ENST00000571456 RAB36O95755 333 aa17.93■□□□□ 0.46
VPS53-210ENST00000571456 IGLV1-44P01699 117 aa17.93■□□□□ 0.46
VPS53-210ENST00000571456 PRR23D2P0DMB1 279 aaPredicted RBP17.93■□□□□ 0.46
VPS53-210ENST00000571456 HSF2Q03933 536 aa17.93■□□□□ 0.46
VPS53-210ENST00000571456 RIPK1Q13546 671 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms