RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 A0A1W2PPL8 197 aa12.94□□□□□ -0.34
VPS39-210ENST00000568357 INAFM1C9JVW0 142 aa12.94□□□□□ -0.34
VPS39-210ENST00000568357 SOCS2O14508 198 aa12.94□□□□□ -0.34
VPS39-210ENST00000568357 XKRYO14609 159 aa12.94□□□□□ -0.34
VPS39-210ENST00000568357 ACOT8O14734 319 aa12.94□□□□□ -0.34
VPS39-210ENST00000568357 AHCYL1O43865 530 aa12.94□□□□□ -0.34
VPS39-210ENST00000568357 KRT36O76013 467 aa12.94□□□□□ -0.34
VPS39-210ENST00000568357 CTLA4P16410 223 aa12.94□□□□□ -0.34
VPS39-210ENST00000568357 FPR3P25089 353 aa12.94□□□□□ -0.34
VPS39-210ENST00000568357 APEX1P27695 318 aaKnown RBP12.94□□□□□ -0.34
VPS39-210ENST00000568357 SDHAP31040 664 aa12.94□□□□□ -0.34
VPS39-210ENST00000568357 PSG4Q00888 419 aa12.94□□□□□ -0.34
VPS39-210ENST00000568357 PLP2Q04941 152 aa12.94□□□□□ -0.34
VPS39-210ENST00000568357 GPR139Q6DWJ6 353 aa12.94□□□□□ -0.34
VPS39-210ENST00000568357 C1orf94Q6P1W5 598 aa12.94□□□□□ -0.34
VPS39-210ENST00000568357 SMARCD3Q6STE5 483 aa12.94□□□□□ -0.34
VPS39-210ENST00000568357 UGT2A3Q6UWM9 527 aa12.94□□□□□ -0.34
VPS39-210ENST00000568357 PTCHD4Q6ZW05 846 aa12.94□□□□□ -0.34
VPS39-210ENST00000568357 LRP11Q86VZ4 500 aa12.94□□□□□ -0.34
VPS39-210ENST00000568357 AKR7LQ8NHP1 331 aa12.94□□□□□ -0.34
VPS39-210ENST00000568357 MRPL24Q96A35 216 aaKnown RBP12.94□□□□□ -0.34
VPS39-210ENST00000568357 CCDC124Q96CT7 223 aaKnown RBP12.94□□□□□ -0.34
VPS39-210ENST00000568357 FOXN4Q96NZ1 517 aa12.94□□□□□ -0.34
VPS39-210ENST00000568357 RHNO1Q9BSD3 238 aa12.94□□□□□ -0.34
VPS39-210ENST00000568357 THTPAQ9BU02 230 aa12.94□□□□□ -0.34
VPS39-210ENST00000568357 NDEL1Q9GZM8 345 aa12.94□□□□□ -0.34
VPS39-210ENST00000568357 CCNB1IP1Q9NPC3 277 aa12.94□□□□□ -0.34
VPS39-210ENST00000568357 FZR1Q9UM11 496 aa12.94□□□□□ -0.34
VPS39-210ENST00000568357 LYVE1Q9Y5Y7 322 aa12.94□□□□□ -0.34
VPS39-210ENST00000568357 ANK3Q12955 4377 aaKnown RBP12.93□□□□□ -0.34
VPS39-210ENST00000568357 IQCMA0A1B0GVH7 501 aa12.93□□□□□ -0.34
VPS39-210ENST00000568357 FAM171A2A8MVW0 826 aa12.93□□□□□ -0.34
VPS39-210ENST00000568357 TXNDC12O95881 172 aa12.93□□□□□ -0.34
VPS39-210ENST00000568357 PTHP01270 115 aa12.93□□□□□ -0.34
VPS39-210ENST00000568357 CST2P09228 141 aa12.93□□□□□ -0.34
VPS39-210ENST00000568357 FAM157BP0CG42 384 aa12.93□□□□□ -0.34
VPS39-210ENST00000568357 CDKN2AP42771 156 aaKnown RBP12.93□□□□□ -0.34
VPS39-210ENST00000568357 GSSP48637 474 aa12.93□□□□□ -0.34
VPS39-210ENST00000568357 DSCR9P59020 149 aa12.93□□□□□ -0.34
VPS39-210ENST00000568357 HSF2Q03933 536 aa12.93□□□□□ -0.34
VPS39-210ENST00000568357 PPP1R8Q12972 351 aaKnown RBP12.93□□□□□ -0.34
VPS39-210ENST00000568357 KRR1Q13601 381 aaKnown RBP12.93□□□□□ -0.34
VPS39-210ENST00000568357 ENDOGQ14249 297 aaKnown RBP12.93□□□□□ -0.34
VPS39-210ENST00000568357 PGBD2Q6P3X8 592 aa12.93□□□□□ -0.34
VPS39-210ENST00000568357 OR4C15Q8NGM1 316 aa12.93□□□□□ -0.34
VPS39-210ENST00000568357 SLC7A6OSQ96CW6 309 aaPredicted RBP12.93□□□□□ -0.34
VPS39-210ENST00000568357 ASB9Q96DX5 294 aa12.93□□□□□ -0.34
VPS39-210ENST00000568357 ZNF416Q9BWM5 594 aa12.93□□□□□ -0.34
VPS39-210ENST00000568357 OR2H1Q9GZK4 316 aa12.93□□□□□ -0.34
VPS39-210ENST00000568357 SYT4Q9H2B2 425 aa12.93□□□□□ -0.34
VPS39-210ENST00000568357 OR52D1Q9H346 318 aa12.93□□□□□ -0.34
VPS39-210ENST00000568357 MAGIXQ9H6Y5 334 aa12.93□□□□□ -0.34
VPS39-210ENST00000568357 EMC7Q9NPA0 242 aa12.93□□□□□ -0.34
VPS39-210ENST00000568357 POLE4Q9NR33 117 aa12.93□□□□□ -0.34
VPS39-210ENST00000568357 VSX1Q9NZR4 365 aaPredicted RBP12.93□□□□□ -0.34
VPS39-210ENST00000568357 SLC7A8Q9UHI5 535 aa12.93□□□□□ -0.34
VPS39-210ENST00000568357 LOC100509620A0A075B734 347 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 A0A096LNT2 108 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 TNFRSF11BO00300 401 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 SLC16A7O60669 478 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 MPZL1O95297 269 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 PPP1R3DO95685 299 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 SNAP29O95721 258 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 GASTP01350 101 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 ADRA2AP08913 450 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 MSR1P21757 451 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 STOMP27105 288 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 IFNGR2P38484 337 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 GUCA1AP43080 201 aaPredicted RBP12.92□□□□□ -0.34
VPS39-210ENST00000568357 EVX1P49640 407 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 PPOXP50336 477 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 RPS6KA3P51812 740 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 UCP2P55851 309 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 ERVS71-1P61550 626 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 KRTAP1-1Q07627 177 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 DBPQ10586 325 aaPredicted RBP12.92□□□□□ -0.34
VPS39-210ENST00000568357 TSPAN31Q12999 210 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 TBC1D28Q2M2D7 210 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 OTPQ5XKR4 325 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 ZNF770Q6IQ21 691 aaPredicted RBP12.92□□□□□ -0.34
VPS39-210ENST00000568357 PGM2L1Q6PCE3 622 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 CLEC2AQ6UVW9 174 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 OR9Q2Q8NGE9 314 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 OR1J2Q8NGS2 313 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 FANK1Q8TC84 345 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 GNPDA2Q8TDQ7 276 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 C10orf105Q8TEF2 133 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 FAM168AQ92567 244 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 POM121L2Q96KW2 1035 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 SAMD8Q96LT4 415 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 ERMAPQ96PL5 475 aaPredicted RBP12.92□□□□□ -0.34
VPS39-210ENST00000568357 SYT3Q9BQG1 590 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 BTBD10Q9BSF8 475 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 TRIM15Q9C019 465 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 NUAK2Q9H093 628 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 WNT5BQ9H1J7 359 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 OR51B6Q9H340 312 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 C1orf198Q9H425 327 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 RERGLQ9H628 205 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 CDH20Q9HBT6 801 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms