RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 K7EIL1 84 aa9.75□□□□□ -0.85
CLK3-222ENST00000568232 RIPK2O43353 540 aa9.75□□□□□ -0.85
CLK3-222ENST00000568232 TIMM8AO60220 97 aaPredicted RBP9.75□□□□□ -0.85
CLK3-222ENST00000568232 TSPAN9O75954 239 aa9.75□□□□□ -0.85
CLK3-222ENST00000568232 CYB5R3P00387 301 aaPredicted RBP9.75□□□□□ -0.85
CLK3-222ENST00000568232 BMP2P12643 396 aa9.75□□□□□ -0.85
CLK3-222ENST00000568232 TNFRSF1AP19438 455 aa9.75□□□□□ -0.85
CLK3-222ENST00000568232 ALDH3A1P30838 453 aa9.75□□□□□ -0.85
CLK3-222ENST00000568232 ANXA11P50995 505 aaKnown RBP9.75□□□□□ -0.85
CLK3-222ENST00000568232 PPP1CBP62140 327 aa9.75□□□□□ -0.85
CLK3-222ENST00000568232 PSG7Q13046 419 aa9.75□□□□□ -0.85
CLK3-222ENST00000568232 MAD2L1Q13257 205 aaPredicted RBP9.75□□□□□ -0.85
CLK3-222ENST00000568232 MELKQ14680 651 aa9.75□□□□□ -0.85
CLK3-222ENST00000568232 MTX3Q5HYI7 312 aa9.75□□□□□ -0.85
CLK3-222ENST00000568232 FOXB2Q5VYV0 432 aa9.75□□□□□ -0.85
CLK3-222ENST00000568232 DHRS7BQ6IAN0 325 aaPredicted RBP9.75□□□□□ -0.85
CLK3-222ENST00000568232 C5orf46Q6UWT4 87 aa9.75□□□□□ -0.85
CLK3-222ENST00000568232 GDPGP1Q6ZNW5 385 aa9.75□□□□□ -0.85
CLK3-222ENST00000568232 ZNF621Q6ZSS3 439 aa9.75□□□□□ -0.85
CLK3-222ENST00000568232 SLC35D2Q76EJ3 337 aa9.75□□□□□ -0.85
CLK3-222ENST00000568232 C10orf53Q8N6V4 93 aa9.75□□□□□ -0.85
CLK3-222ENST00000568232 SCAIQ8N9R8 606 aa9.75□□□□□ -0.85
CLK3-222ENST00000568232 AKR7LQ8NHP1 331 aa9.75□□□□□ -0.85
CLK3-222ENST00000568232 SLC38A5Q8WUX1 472 aa9.75□□□□□ -0.85
CLK3-222ENST00000568232 GATAD2BQ8WXI9 593 aa9.75□□□□□ -0.85
CLK3-222ENST00000568232 NEIL1Q96FI4 390 aaPredicted RBP9.75□□□□□ -0.85
CLK3-222ENST00000568232 PLEKHA8Q96JA3 519 aa9.75□□□□□ -0.85
CLK3-222ENST00000568232 CCDC115Q96NT0 180 aa9.75□□□□□ -0.85
CLK3-222ENST00000568232 PANX1Q96RD7 426 aa9.75□□□□□ -0.85
CLK3-222ENST00000568232 TBX15Q96SF7 602 aa9.75□□□□□ -0.85
CLK3-222ENST00000568232 TMEM246Q9BRR3 403 aa9.75□□□□□ -0.85
CLK3-222ENST00000568232 MRPL39Q9NYK5 338 aaKnown RBP9.75□□□□□ -0.85
CLK3-222ENST00000568232 CGGBP1Q9UFW8 167 aaPredicted RBP9.75□□□□□ -0.85
CLK3-222ENST00000568232 MIOXQ9UGB7 285 aa9.75□□□□□ -0.85
CLK3-222ENST00000568232 ZNF232Q9UNY5 417 aa9.75□□□□□ -0.85
CLK3-222ENST00000568232 SIGLEC9Q9Y336 463 aa9.75□□□□□ -0.85
CLK3-222ENST00000568232 COPEO14579 308 aa9.74□□□□□ -0.85
CLK3-222ENST00000568232 ENTPD5O75356 428 aa9.74□□□□□ -0.85
CLK3-222ENST00000568232 TOX4O94842 621 aa9.74□□□□□ -0.85
CLK3-222ENST00000568232 ADORA3P0DMS8 318 aa9.74□□□□□ -0.85
CLK3-222ENST00000568232 ETFAP13804 333 aa9.74□□□□□ -0.85
CLK3-222ENST00000568232 TNFSF4P23510 183 aa9.74□□□□□ -0.85
CLK3-222ENST00000568232 CFHR2P36980 270 aa9.74□□□□□ -0.85
CLK3-222ENST00000568232 PITPNBP48739 271 aa9.74□□□□□ -0.85
CLK3-222ENST00000568232 MVDP53602 400 aa9.74□□□□□ -0.85
CLK3-222ENST00000568232 CKAP4Q07065 602 aaKnown RBP9.74□□□□□ -0.85
CLK3-222ENST00000568232 ZMAT1Q5H9K5 638 aa9.74□□□□□ -0.85
CLK3-222ENST00000568232 ALG10BQ5I7T1 473 aa9.74□□□□□ -0.85
CLK3-222ENST00000568232 FAM201AQ5SY85 155 aa9.74□□□□□ -0.85
CLK3-222ENST00000568232 SLC35E4Q6ICL7 350 aa9.74□□□□□ -0.85
CLK3-222ENST00000568232 LYPD2Q6UXB3 125 aa9.74□□□□□ -0.85
CLK3-222ENST00000568232 DPPA2Q7Z7J5 298 aa9.74□□□□□ -0.85
CLK3-222ENST00000568232 COMTD1Q86VU5 262 aa9.74□□□□□ -0.85
CLK3-222ENST00000568232 PDZD9Q8IXQ8 264 aa9.74□□□□□ -0.85
CLK3-222ENST00000568232 C4orf33Q8N1A6 199 aa9.74□□□□□ -0.85
CLK3-222ENST00000568232 OR6X1Q8NH79 312 aa9.74□□□□□ -0.85
CLK3-222ENST00000568232 ZNF566Q969W8 418 aa9.74□□□□□ -0.85
CLK3-222ENST00000568232 TESCQ96BS2 214 aa9.74□□□□□ -0.85
CLK3-222ENST00000568232 TEX37Q96LM6 180 aa9.74□□□□□ -0.85
CLK3-222ENST00000568232 OR2V2Q96R30 315 aa9.74□□□□□ -0.85
CLK3-222ENST00000568232 POFUT1Q9H488 388 aa9.74□□□□□ -0.85
CLK3-222ENST00000568232 C12orf10Q9HB07 376 aa9.74□□□□□ -0.85
CLK3-222ENST00000568232 GCM1Q9NP62 436 aa9.74□□□□□ -0.85
CLK3-222ENST00000568232 P2RX2Q9UBL9 471 aa9.74□□□□□ -0.85
CLK3-222ENST00000568232 BTNL2Q9UIR0 455 aa9.74□□□□□ -0.85
CLK3-222ENST00000568232 DOCK11Q5JSL3 2073 aa9.74□□□□□ -0.85
CLK3-222ENST00000568232 DYNC2H1Q8NCM8 4307 aaKnown RBP9.74□□□□□ -0.85
CLK3-222ENST00000568232 IGHV1-69DA0A0B4J2H0 117 aa9.73□□□□□ -0.85
CLK3-222ENST00000568232 IGHV3-64DA0A0J9YX35 117 aa9.73□□□□□ -0.85
CLK3-222ENST00000568232 ATP8B1O43520 1251 aa9.73□□□□□ -0.85
CLK3-222ENST00000568232 MGRN1O60291 552 aa9.73□□□□□ -0.85
CLK3-222ENST00000568232 IGHV1-69P01742 117 aa9.73□□□□□ -0.85
CLK3-222ENST00000568232 PGA4P0DJD7 388 aa9.73□□□□□ -0.85
CLK3-222ENST00000568232 PGA3P0DJD8 388 aa9.73□□□□□ -0.85
CLK3-222ENST00000568232 MMP9P14780 707 aa9.73□□□□□ -0.85
CLK3-222ENST00000568232 ZNF32P17041 273 aa9.73□□□□□ -0.85
CLK3-222ENST00000568232 S100A3P33764 101 aa9.73□□□□□ -0.85
CLK3-222ENST00000568232 GDI2P50395 445 aaKnown RBP9.73□□□□□ -0.85
CLK3-222ENST00000568232 CRISP3P54108 245 aa9.73□□□□□ -0.85
CLK3-222ENST00000568232 NME5P56597 212 aa9.73□□□□□ -0.85
CLK3-222ENST00000568232 DEFB121Q5J5C9 76 aa9.73□□□□□ -0.85
CLK3-222ENST00000568232 WDR25Q64LD2 544 aaPredicted RBP9.73□□□□□ -0.85
CLK3-222ENST00000568232 ZNF841Q6ZN19 808 aa9.73□□□□□ -0.85
CLK3-222ENST00000568232 LDLRAD3Q86YD5 345 aa9.73□□□□□ -0.85
CLK3-222ENST00000568232 TRIML2Q8N7C3 387 aa9.73□□□□□ -0.85
CLK3-222ENST00000568232 OR8B3Q8NGG8 313 aa9.73□□□□□ -0.85
CLK3-222ENST00000568232 OR6S1Q8NH40 331 aa9.73□□□□□ -0.85
CLK3-222ENST00000568232 C10orf82Q8WW14 230 aa9.73□□□□□ -0.85
CLK3-222ENST00000568232 LHX4Q969G2 390 aa9.73□□□□□ -0.85
CLK3-222ENST00000568232 MCHR2Q969V1 340 aa9.73□□□□□ -0.85
CLK3-222ENST00000568232 SLC25A44Q96H78 314 aaPredicted RBP9.73□□□□□ -0.85
CLK3-222ENST00000568232 TMEM19Q96HH6 336 aa9.73□□□□□ -0.85
CLK3-222ENST00000568232 OR8B2Q96RD0 313 aa9.73□□□□□ -0.85
CLK3-222ENST00000568232 ZNF347Q96SE7 839 aa9.73□□□□□ -0.85
CLK3-222ENST00000568232 TRIM15Q9C019 465 aa9.73□□□□□ -0.85
CLK3-222ENST00000568232 DPAGT1Q9H3H5 408 aa9.73□□□□□ -0.85
CLK3-222ENST00000568232 ARMC7Q9H6L4 198 aa9.73□□□□□ -0.85
CLK3-222ENST00000568232 AKTIPQ9H8T0 292 aa9.73□□□□□ -0.85
CLK3-222ENST00000568232 CALML5Q9NZT1 146 aa9.73□□□□□ -0.85
CLK3-222ENST00000568232 CLN8Q9UBY8 286 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms