RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 CLDN22Q8N7P3 220 aa13.69□□□□□ -0.22
CLN3-229ENST00000567963 AKR7LQ8NHP1 331 aa13.69□□□□□ -0.22
CLN3-229ENST00000567963 FNDC8Q8TC99 324 aa13.69□□□□□ -0.22
CLN3-229ENST00000567963 GTF3AQ92664 365 aaKnown RBP13.69□□□□□ -0.22
CLN3-229ENST00000567963 MARS2Q96GW9 593 aaKnown RBP13.69□□□□□ -0.22
CLN3-229ENST00000567963 ALG12Q9BV10 488 aa13.69□□□□□ -0.22
CLN3-229ENST00000567963 OCEL1Q9H607 264 aa13.69□□□□□ -0.22
CLN3-229ENST00000567963 METTL17Q9H7H0 456 aaPredicted RBP13.69□□□□□ -0.22
CLN3-229ENST00000567963 EIF3KQ9UBQ5 218 aaKnown RBP13.69□□□□□ -0.22
CLN3-229ENST00000567963 TRAV20A0A0B4J274 112 aa13.68□□□□□ -0.22
CLN3-229ENST00000567963 ATP8B1O43520 1251 aa13.68□□□□□ -0.22
CLN3-229ENST00000567963 MAKP20794 623 aa13.68□□□□□ -0.22
CLN3-229ENST00000567963 GCH1P30793 250 aa13.68□□□□□ -0.22
CLN3-229ENST00000567963 IFNA8P32881 189 aa13.68□□□□□ -0.22
CLN3-229ENST00000567963 MMP15P51511 669 aa13.68□□□□□ -0.22
CLN3-229ENST00000567963 CTXN1P60606 82 aa13.68□□□□□ -0.22
CLN3-229ENST00000567963 GLO1Q04760 184 aa13.68□□□□□ -0.22
CLN3-229ENST00000567963 TSTQ16762 297 aaKnown RBP13.68□□□□□ -0.22
CLN3-229ENST00000567963 ZNF718Q3SXZ3 478 aa13.68□□□□□ -0.22
CLN3-229ENST00000567963 SPATA46Q5T0L3 261 aa13.68□□□□□ -0.22
CLN3-229ENST00000567963 AVPI1Q5T686 147 aa13.68□□□□□ -0.22
CLN3-229ENST00000567963 ACSM5Q6NUN0 579 aa13.68□□□□□ -0.22
CLN3-229ENST00000567963 FAHD2BQ6P2I3 314 aaPredicted RBP13.68□□□□□ -0.22
CLN3-229ENST00000567963 UNQ6126/PRO20091Q6UXV3 157 aa13.68□□□□□ -0.22
CLN3-229ENST00000567963 USP51Q70EK9 711 aa13.68□□□□□ -0.22
CLN3-229ENST00000567963 LRRC75AQ8NAA5 344 aa13.68□□□□□ -0.22
CLN3-229ENST00000567963 LZICQ8WZA0 190 aa13.68□□□□□ -0.22
CLN3-229ENST00000567963 FAHD2AQ96GK7 314 aa13.68□□□□□ -0.22
CLN3-229ENST00000567963 ZNF665Q9H7R5 613 aa13.68□□□□□ -0.22
CLN3-229ENST00000567963 SAP30LQ9HAJ7 183 aa13.68□□□□□ -0.22
CLN3-229ENST00000567963 SNX13Q9Y5W8 968 aa13.68□□□□□ -0.22
CLN3-229ENST00000567963 A0A0A6YYJ9 748 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 HAX1O00165 279 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 TPD52L2O43399 206 aaKnown RBP13.67□□□□□ -0.22
CLN3-229ENST00000567963 CST2P09228 141 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 LAP3P28838 519 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 MPV17P39210 176 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 GUCA1AP43080 201 aaPredicted RBP13.67□□□□□ -0.22
CLN3-229ENST00000567963 YAP1P46937 504 aaKnown RBP13.67□□□□□ -0.22
CLN3-229ENST00000567963 GDI2P50395 445 aaKnown RBP13.67□□□□□ -0.22
CLN3-229ENST00000567963 ZNF81P51508 661 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 FHL1Q13642 323 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 HFEQ30201 348 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 TMEM255AQ5JRV8 349 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 FAM209AQ5JX71 171 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 MBNL2Q5VZF2 373 aaKnown RBP13.67□□□□□ -0.22
CLN3-229ENST00000567963 IGFN1Q86VF2 1251 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 C1orf174Q8IYL3 243 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 ALDH16A1Q8IZ83 802 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 OR51A7Q8NH64 312 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 SLC25A40Q8TBP6 338 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 OR2H1Q9GZK4 316 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 OR2J1Q9GZK6 312 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 WNT5BQ9H1J7 359 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 MAN2C1Q9NTJ4 1040 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 RHCGQ9UBD6 479 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 WIPI2Q9Y4P8 454 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 TIMM10BQ9Y5J6 103 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 CACNG2Q9Y698 323 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 TRAV27A0A087WT01 109 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 J3KTA2 159 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 FFAR1O14842 300 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 DEAF1O75398 565 aaPredicted RBP13.67□□□□□ -0.22
CLN3-229ENST00000567963 PNPP00491 289 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 IGHV1-46P01743 117 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 PRKCDQ05655 676 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 ANKDD1AQ495B1 522 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 FAM205BPQ63HN1 556 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 C1orf229Q6ZS94 237 aaPredicted RBP13.67□□□□□ -0.22
CLN3-229ENST00000567963 FOXL2NBQ6ZUU3 175 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 VTCN1Q7Z7D3 282 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 OAFQ86UD1 273 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 NRMQ8IXM6 262 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 OFCC1Q8IZS5 231 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 KLF14Q8TD94 323 aaPredicted RBP13.67□□□□□ -0.22
CLN3-229ENST00000567963 IPCEF1Q8WWN9 437 aaPredicted RBP13.67□□□□□ -0.22
CLN3-229ENST00000567963 FNDC11Q9BVV2 318 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 G6PC2Q9NQR9 355 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 CMTM6Q9NX76 183 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 CAPN7Q9Y6W3 813 aa13.67□□□□□ -0.22
CLN3-229ENST00000567963 PLSCR5A0PG75 271 aa13.66□□□□□ -0.22
CLN3-229ENST00000567963 CLDN25C9JDP6 229 aa13.66□□□□□ -0.22
CLN3-229ENST00000567963 SPRY3O43610 288 aa13.66□□□□□ -0.22
CLN3-229ENST00000567963 PLPP2O43688 288 aa13.66□□□□□ -0.22
CLN3-229ENST00000567963 ICMTO60725 284 aa13.66□□□□□ -0.22
CLN3-229ENST00000567963 VENTXO95231 258 aa13.66□□□□□ -0.22
CLN3-229ENST00000567963 MPZL1O95297 269 aa13.66□□□□□ -0.22
CLN3-229ENST00000567963 NGFP01138 241 aa13.66□□□□□ -0.22
CLN3-229ENST00000567963 PCBD1P61457 104 aa13.66□□□□□ -0.22
CLN3-229ENST00000567963 SCGB2A2Q13296 93 aa13.66□□□□□ -0.22
CLN3-229ENST00000567963 TRAM2Q15035 370 aa13.66□□□□□ -0.22
CLN3-229ENST00000567963 SHQ1Q6PI26 577 aaKnown RBP13.66□□□□□ -0.22
CLN3-229ENST00000567963 MEX3DQ86XN8 651 aaKnown RBP13.66□□□□□ -0.22
CLN3-229ENST00000567963 SLC15A3Q8IY34 581 aa13.66□□□□□ -0.22
CLN3-229ENST00000567963 RNF113BQ8IZP6 322 aaKnown RBP13.66□□□□□ -0.22
CLN3-229ENST00000567963 ABHD4Q8TB40 342 aa13.66□□□□□ -0.22
CLN3-229ENST00000567963 CCL17Q92583 94 aa13.66□□□□□ -0.22
CLN3-229ENST00000567963 RCN3Q96D15 328 aa13.66□□□□□ -0.22
CLN3-229ENST00000567963 RAB39BQ96DA2 213 aa13.66□□□□□ -0.22
CLN3-229ENST00000567963 ELMOD3Q96FG2 381 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms