RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 HRKO00198 91 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 PRAMEF2O60811 474 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 RP2O75695 350 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 CER1O95813 267 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 ABHD16AO95870 558 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 NMBP08949 121 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 TMIGD3P0DMS9 266 aaPredicted RBP11.97□□□□□ -0.49
VPS4A-204ENST00000566354 CT45A8P0DMV1 189 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 CT45A9P0DMV2 189 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 PNMTP11086 282 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 SDHAP31040 664 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 MAP2K6P52564 334 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 ELOA3BQ3SY89 546 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 CT45A2Q5DJT8 189 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 CDC20BQ86Y33 519 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 NAXDQ8IW45 347 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 ELOA3Q8NG57 546 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 OR6S1Q8NH40 331 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 TSSK2Q96PF2 358 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 STEAP1Q9UHE8 339 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 KLHDC2Q9Y2U9 406 aa11.97□□□□□ -0.49
VPS4A-204ENST00000566354 TRBV5-7A0A0A0MS05 114 aa11.96□□□□□ -0.49
VPS4A-204ENST00000566354 IGHV5-51A0A0C4DH38 117 aa11.96□□□□□ -0.49
VPS4A-204ENST00000566354 KRBOX1C9JBD0 128 aa11.96□□□□□ -0.49
VPS4A-204ENST00000566354 MAS1P04201 325 aa11.96□□□□□ -0.49
VPS4A-204ENST00000566354 VSIG10L2P0DP72 767 aa11.96□□□□□ -0.49
VPS4A-204ENST00000566354 CSF2RBP32927 897 aa11.96□□□□□ -0.49
VPS4A-204ENST00000566354 NUP62P37198 522 aaPredicted RBP11.96□□□□□ -0.49
VPS4A-204ENST00000566354 RAC1P63000 192 aa11.96□□□□□ -0.49
VPS4A-204ENST00000566354 CSRP2Q16527 193 aa11.96□□□□□ -0.49
VPS4A-204ENST00000566354 ZNF74Q16587 644 aa11.96□□□□□ -0.49
VPS4A-204ENST00000566354 ANKRD16Q6P6B7 361 aa11.96□□□□□ -0.49
VPS4A-204ENST00000566354 TMUB2Q71RG4 321 aa11.96□□□□□ -0.49
VPS4A-204ENST00000566354 BCORP1Q8N888 145 aa11.96□□□□□ -0.49
VPS4A-204ENST00000566354 OR52B4Q8NGK2 314 aa11.96□□□□□ -0.49
VPS4A-204ENST00000566354 OR6N1Q8NGY5 312 aa11.96□□□□□ -0.49
VPS4A-204ENST00000566354 WDR89Q96FK6 387 aaPredicted RBP11.96□□□□□ -0.49
VPS4A-204ENST00000566354 KLHL15Q96M94 604 aa11.96□□□□□ -0.49
VPS4A-204ENST00000566354 GINS4Q9BRT9 223 aa11.96□□□□□ -0.49
VPS4A-204ENST00000566354 COMMD4Q9H0A8 199 aa11.96□□□□□ -0.49
VPS4A-204ENST00000566354 IFT46Q9NQC8 304 aa11.96□□□□□ -0.49
VPS4A-204ENST00000566354 MED11Q9P086 117 aa11.96□□□□□ -0.49
VPS4A-204ENST00000566354 OR10H1Q9Y4A9 318 aa11.96□□□□□ -0.49
VPS4A-204ENST00000566354 ASCC3Q8N3C0 2202 aaKnown RBP11.96□□□□□ -0.5
VPS4A-204ENST00000566354 TMEM212A6NML5 194 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 DBX1A6NMT0 343 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 OR4C45A6NMZ5 311 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 ARPC5O15511 151 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 TXNDC12O95881 172 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 PPP3CBP16298 524 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 CSRP1P21291 193 aaKnown RBP11.95□□□□□ -0.5
VPS4A-204ENST00000566354 CD1CP29017 333 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 GPR3P46089 330 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 H2BFSP57053 126 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 CTXN1P60606 82 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 GMFBP60983 142 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 ALG10Q5BKT4 473 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 SFRP5Q5T4F7 317 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 WBP2NLQ6ICG8 309 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 C10orf53Q8N6V4 93 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 ZNF676Q8N7Q3 588 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 LRRC75AQ8NAA5 344 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 OR4C16Q8NGL9 310 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 OR2G2Q8NGZ5 317 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 GPR148Q8TDV2 347 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 TMEM106AQ96A25 262 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 LINC00052Q96N35 136 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 OR1F2PQ96R84 312 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 FKRPQ9H9S5 495 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 SRA1Q9HD15 236 aaKnown RBP11.95□□□□□ -0.5
VPS4A-204ENST00000566354 LAMP5Q9UJQ1 280 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 IKZF2Q9UKS7 526 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 TRAV8-7A0A075B6U6 113 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 GGT3PA6NGU5 568 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 C4orf47A7E2U8 309 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 RLN1P04808 185 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 RNH1P13489 461 aaKnown RBP11.95□□□□□ -0.5
VPS4A-204ENST00000566354 GABRA1P14867 456 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 EGR3Q06889 387 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 NR0B2Q15466 257 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 MPPED2Q15777 294 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.95□□□□□ -0.5
VPS4A-204ENST00000566354 TUSC1Q2TAM9 212 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 KLHL26Q53HC5 615 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 EMC4Q5J8M3 183 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 OVCH2Q7RTZ1 564 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 OR5M1Q8NGP8 315 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 ASB13Q8WXK3 278 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 THRSPQ92748 146 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 DPYSL5Q9BPU6 564 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 SHARPINQ9H0F6 387 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 GRHPRQ9UBQ7 328 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 EPHA6Q9UF33 1036 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 ZNF346Q9UL40 294 aaKnown RBP11.95□□□□□ -0.5
VPS4A-204ENST00000566354 MRPS33Q9Y291 106 aaKnown RBP11.95□□□□□ -0.5
VPS4A-204ENST00000566354 TMEM14AQ9Y6G1 99 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 HEATR5AQ86XA9 2040 aa11.95□□□□□ -0.5
VPS4A-204ENST00000566354 EP300Q09472 2414 aaPredicted RBP11.95□□□□□ -0.5
VPS4A-204ENST00000566354 TLCD2A6NGC4 264 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 HSPB2A8KAH6 182 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms