RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 TPD52L3Q96J77 140 aa15.96■□□□□ 0.15
CLN3-218ENST00000565688 POM121L2Q96KW2 1035 aa15.96■□□□□ 0.15
CLN3-218ENST00000565688 PRRC1Q96M27 445 aa15.96■□□□□ 0.15
CLN3-218ENST00000565688 ZNF665Q9H7R5 613 aa15.96■□□□□ 0.15
CLN3-218ENST00000565688 SAP30LQ9HAJ7 183 aa15.96■□□□□ 0.15
CLN3-218ENST00000565688 SAR1AQ9NR31 198 aa15.96■□□□□ 0.15
CLN3-218ENST00000565688 TENM1Q9UKZ4 2725 aa15.95■□□□□ 0.14
CLN3-218ENST00000565688 PLSCR5A0PG75 271 aa15.95■□□□□ 0.14
CLN3-218ENST00000565688 C5orf49A4QMS7 147 aa15.95■□□□□ 0.14
CLN3-218ENST00000565688 CLDN25C9JDP6 229 aa15.95■□□□□ 0.14
CLN3-218ENST00000565688 PNPP00491 289 aa15.95■□□□□ 0.14
CLN3-218ENST00000565688 IGHMP01871 453 aa15.95■□□□□ 0.14
CLN3-218ENST00000565688 IFI30P13284 250 aa15.95■□□□□ 0.14
CLN3-218ENST00000565688 ZNF81P51508 661 aa15.95■□□□□ 0.14
CLN3-218ENST00000565688 PCBD1P61457 104 aa15.95■□□□□ 0.14
CLN3-218ENST00000565688 SELENOWP63302 87 aa15.95■□□□□ 0.14
CLN3-218ENST00000565688 MVKQ03426 396 aa15.95■□□□□ 0.14
CLN3-218ENST00000565688 TOP3AQ13472 1001 aaPredicted RBP15.95■□□□□ 0.14
CLN3-218ENST00000565688 ANKDD1AQ495B1 522 aa15.95■□□□□ 0.14
CLN3-218ENST00000565688 FAHD2BQ6P2I3 314 aaPredicted RBP15.95■□□□□ 0.14
CLN3-218ENST00000565688 USP51Q70EK9 711 aa15.95■□□□□ 0.14
CLN3-218ENST00000565688 MEX3DQ86XN8 651 aaKnown RBP15.95■□□□□ 0.14
CLN3-218ENST00000565688 ELMOD3Q96FG2 381 aa15.95■□□□□ 0.14
CLN3-218ENST00000565688 FAHD2AQ96GK7 314 aa15.95■□□□□ 0.14
CLN3-218ENST00000565688 CYSLTR2Q9NS75 346 aa15.95■□□□□ 0.14
CLN3-218ENST00000565688 AP3M1Q9Y2T2 418 aa15.95■□□□□ 0.14
CLN3-218ENST00000565688 LOC100509620A0A075B734 347 aa15.94■□□□□ 0.14
CLN3-218ENST00000565688 LOC100653049A0A140TA62 436 aa15.94■□□□□ 0.14
CLN3-218ENST00000565688 A6NIZ1 184 aa15.94■□□□□ 0.14
CLN3-218ENST00000565688 H3BSA7 217 aa15.94■□□□□ 0.14
CLN3-218ENST00000565688 PIP5K1CO60331 668 aa15.94■□□□□ 0.14
CLN3-218ENST00000565688 KRT34O76011 436 aa15.94■□□□□ 0.14
CLN3-218ENST00000565688 CST2P09228 141 aa15.94■□□□□ 0.14
CLN3-218ENST00000565688 H2AFXP16104 143 aaPredicted RBP15.94■□□□□ 0.14
CLN3-218ENST00000565688 LIPAP38571 399 aa15.94■□□□□ 0.14
CLN3-218ENST00000565688 WNT5AP41221 380 aa15.94■□□□□ 0.14
CLN3-218ENST00000565688 RAP1BP61224 184 aa15.94■□□□□ 0.14
CLN3-218ENST00000565688 RAP1AP62834 184 aa15.94■□□□□ 0.14
CLN3-218ENST00000565688 ERVK-25P63136 954 aa15.94■□□□□ 0.14
CLN3-218ENST00000565688 PSG4Q00888 419 aa15.94■□□□□ 0.14
CLN3-218ENST00000565688 GLO1Q04760 184 aa15.94■□□□□ 0.14
CLN3-218ENST00000565688 TSTQ16762 297 aaKnown RBP15.94■□□□□ 0.14
CLN3-218ENST00000565688 AVPI1Q5T686 147 aa15.94■□□□□ 0.14
CLN3-218ENST00000565688 MBNL2Q5VZF2 373 aaKnown RBP15.94■□□□□ 0.14
CLN3-218ENST00000565688 MICU2Q8IYU8 434 aa15.94■□□□□ 0.14
CLN3-218ENST00000565688 ZNF101Q8IZC7 436 aa15.94■□□□□ 0.14
CLN3-218ENST00000565688 AKR7LQ8NHP1 331 aa15.94■□□□□ 0.14
CLN3-218ENST00000565688 ZNF418Q8TF45 676 aaPredicted RBP15.94■□□□□ 0.14
CLN3-218ENST00000565688 RAB1CQ92928 201 aa15.94■□□□□ 0.14
CLN3-218ENST00000565688 MARS2Q96GW9 593 aaKnown RBP15.94■□□□□ 0.14
CLN3-218ENST00000565688 OR2H1Q9GZK4 316 aa15.94■□□□□ 0.14
CLN3-218ENST00000565688 CGGBP1Q9UFW8 167 aaPredicted RBP15.94■□□□□ 0.14
CLN3-218ENST00000565688 A4GNTQ9UNA3 340 aa15.94■□□□□ 0.14
CLN3-218ENST00000565688 TIMM10BQ9Y5J6 103 aa15.94■□□□□ 0.14
CLN3-218ENST00000565688 IGKV1D-43A0A0B4J1Z2 117 aa15.93■□□□□ 0.14
CLN3-218ENST00000565688 ELOVL7A1L3X0 281 aa15.93■□□□□ 0.14
CLN3-218ENST00000565688 ICMTO60725 284 aa15.93■□□□□ 0.14
CLN3-218ENST00000565688 LAP3P28838 519 aa15.93■□□□□ 0.14
CLN3-218ENST00000565688 CTXN1P60606 82 aa15.93■□□□□ 0.14
CLN3-218ENST00000565688 SPATA46Q5T0L3 261 aa15.93■□□□□ 0.14
CLN3-218ENST00000565688 ARL9Q6T311 187 aa15.93■□□□□ 0.14
CLN3-218ENST00000565688 OFCC1Q8IZS5 231 aa15.93■□□□□ 0.14
CLN3-218ENST00000565688 GTF3AQ92664 365 aaKnown RBP15.93■□□□□ 0.14
CLN3-218ENST00000565688 EGLN1Q9GZT9 426 aa15.93■□□□□ 0.14
CLN3-218ENST00000565688 FGFR1OP2Q9NVK5 253 aa15.93■□□□□ 0.14
CLN3-218ENST00000565688 WIPI2Q9Y4P8 454 aa15.93■□□□□ 0.14
CLN3-218ENST00000565688 A0A0G2JMP0 313 aa15.92■□□□□ 0.14
CLN3-218ENST00000565688 A0A0X1KG70 313 aa15.92■□□□□ 0.14
CLN3-218ENST00000565688 SLC22A2O15244 555 aa15.92■□□□□ 0.14
CLN3-218ENST00000565688 MPZL1O95297 269 aa15.92■□□□□ 0.14
CLN3-218ENST00000565688 IGHV1-46P01743 117 aa15.92■□□□□ 0.14
CLN3-218ENST00000565688 IFNW1P05000 195 aa15.92■□□□□ 0.14
CLN3-218ENST00000565688 SLC9A3P48764 834 aa15.92■□□□□ 0.14
CLN3-218ENST00000565688 MMP15P51511 669 aa15.92■□□□□ 0.14
CLN3-218ENST00000565688 ARHGDIAP52565 204 aa15.92■□□□□ 0.14
CLN3-218ENST00000565688 SLC3A1Q07837 685 aa15.92■□□□□ 0.14
CLN3-218ENST00000565688 TRAM2Q15035 370 aa15.92■□□□□ 0.14
CLN3-218ENST00000565688 ZMAT1Q5H9K5 638 aa15.92■□□□□ 0.14
CLN3-218ENST00000565688 FOXL2NBQ6ZUU3 175 aa15.92■□□□□ 0.14
CLN3-218ENST00000565688 ARPINQ7Z6K5 226 aa15.92■□□□□ 0.14
CLN3-218ENST00000565688 SYT9Q86SS6 491 aa15.92■□□□□ 0.14
CLN3-218ENST00000565688 OAFQ86UD1 273 aa15.92■□□□□ 0.14
CLN3-218ENST00000565688 RNF113BQ8IZP6 322 aaKnown RBP15.92■□□□□ 0.14
CLN3-218ENST00000565688 OR4M2Q8NGB6 313 aa15.92■□□□□ 0.14
CLN3-218ENST00000565688 ABHD4Q8TB40 342 aa15.92■□□□□ 0.14
CLN3-218ENST00000565688 SLC25A40Q8TBP6 338 aa15.92■□□□□ 0.14
CLN3-218ENST00000565688 KLF14Q8TD94 323 aaPredicted RBP15.92■□□□□ 0.14
CLN3-218ENST00000565688 IPCEF1Q8WWN9 437 aaPredicted RBP15.92■□□□□ 0.14
CLN3-218ENST00000565688 DIRC2Q96SL1 478 aa15.92■□□□□ 0.14
CLN3-218ENST00000565688 WACQ9BTA9 647 aa15.92■□□□□ 0.14
CLN3-218ENST00000565688 FNDC11Q9BVV2 318 aa15.92■□□□□ 0.14
CLN3-218ENST00000565688 OR2J1Q9GZK6 312 aa15.92■□□□□ 0.14
CLN3-218ENST00000565688 WNT5BQ9H1J7 359 aa15.92■□□□□ 0.14
CLN3-218ENST00000565688 ELOVL3Q9HB03 270 aa15.92■□□□□ 0.14
CLN3-218ENST00000565688 G6PC2Q9NQR9 355 aa15.92■□□□□ 0.14
CLN3-218ENST00000565688 ZDHHC8Q9ULC8 765 aa15.92■□□□□ 0.14
CLN3-218ENST00000565688 CAPN7Q9Y6W3 813 aa15.92■□□□□ 0.14
CLN3-218ENST00000565688 C12orf71A8MTZ7 269 aa15.91■□□□□ 0.14
CLN3-218ENST00000565688 EFCAB9A8MZ26 197 aa15.91■□□□□ 0.14
CLN3-218ENST00000565688 J3QLI3 93 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms