RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 SLC16A7O60669 478 aa15.02■□□□□ -0
CLN3-217ENST00000565354 KHDRBS3O75525 346 aaKnown RBP15.02■□□□□ -0
CLN3-217ENST00000565354 HLA-HP01893 362 aa15.02■□□□□ -0
CLN3-217ENST00000565354 IGFBP1P08833 259 aaPredicted RBP15.02■□□□□ -0
CLN3-217ENST00000565354 OSMP13725 252 aa15.02■□□□□ -0
CLN3-217ENST00000565354 CDAP32320 146 aa15.02■□□□□ -0
CLN3-217ENST00000565354 CDKN2AP42771 156 aaKnown RBP15.02■□□□□ -0
CLN3-217ENST00000565354 PIGFQ07326 219 aa15.02■□□□□ -0
CLN3-217ENST00000565354 KHDRBS1Q07666 443 aaKnown RBP eCLIP15.02■□□□□ -0
CLN3-217ENST00000565354 SLC36A2Q495M3 483 aa15.02■□□□□ -0
CLN3-217ENST00000565354 TMEM53Q6P2H8 277 aa15.02■□□□□ -0
CLN3-217ENST00000565354 ZNF704Q6ZNC4 412 aaPredicted RBP15.02■□□□□ -0
CLN3-217ENST00000565354 PTCHD4Q6ZW05 846 aa15.02■□□□□ -0
CLN3-217ENST00000565354 ZNF627Q7L945 461 aa15.02■□□□□ -0
CLN3-217ENST00000565354 MDP1Q86V88 176 aa15.02■□□□□ -0
CLN3-217ENST00000565354 SKA3Q8IX90 412 aa15.02■□□□□ -0
CLN3-217ENST00000565354 LRRC18Q8N456 261 aa15.02■□□□□ -0
CLN3-217ENST00000565354 SDR9C7Q8NEX9 313 aa15.02■□□□□ -0
CLN3-217ENST00000565354 OR52E2Q8NGJ4 325 aa15.02■□□□□ -0
CLN3-217ENST00000565354 OR8D4Q8NGM9 314 aa15.02■□□□□ -0
CLN3-217ENST00000565354 HTRA1Q92743 480 aa15.02■□□□□ -0
CLN3-217ENST00000565354 NMNAT3Q96T66 252 aa15.02■□□□□ -0
CLN3-217ENST00000565354 SH3GL3Q99963 347 aa15.02■□□□□ -0
CLN3-217ENST00000565354 TEX12Q9BXU0 123 aa15.02■□□□□ -0
CLN3-217ENST00000565354 UBTD1Q9HAC8 227 aa15.02■□□□□ -0
CLN3-217ENST00000565354 PAPOLBQ9NRJ5 636 aaKnown RBP15.02■□□□□ -0
CLN3-217ENST00000565354 VSX1Q9NZR4 365 aaPredicted RBP15.02■□□□□ -0
CLN3-217ENST00000565354 POU2F3Q9UKI9 436 aa15.02■□□□□ -0
CLN3-217ENST00000565354 SAC3D1A6NKF1 404 aa15.01□□□□□ -0.01
CLN3-217ENST00000565354 BHLHE40O14503 412 aa15.01□□□□□ -0.01
CLN3-217ENST00000565354 MGRN1O60291 552 aa15.01□□□□□ -0.01
CLN3-217ENST00000565354 IFNGP01579 166 aa15.01□□□□□ -0.01
CLN3-217ENST00000565354 CBR1P16152 277 aa15.01□□□□□ -0.01
CLN3-217ENST00000565354 CD40P25942 277 aa15.01□□□□□ -0.01
CLN3-217ENST00000565354 CRABP1P29762 137 aa15.01□□□□□ -0.01
CLN3-217ENST00000565354 ARR3P36575 388 aa15.01□□□□□ -0.01
CLN3-217ENST00000565354 PTDSS1P48651 473 aaKnown RBP15.01□□□□□ -0.01
CLN3-217ENST00000565354 IDH3GP51553 393 aaPredicted RBP15.01□□□□□ -0.01
CLN3-217ENST00000565354 MRPS34P82930 218 aaKnown RBP15.01□□□□□ -0.01
CLN3-217ENST00000565354 NRN1LQ496H8 165 aa15.01□□□□□ -0.01
CLN3-217ENST00000565354 ADAM5Q6NVV9 412 aa15.01□□□□□ -0.01
CLN3-217ENST00000565354 SLC22A25Q6T423 547 aa15.01□□□□□ -0.01
CLN3-217ENST00000565354 SEZ6L2Q6UXD5 910 aa15.01□□□□□ -0.01
CLN3-217ENST00000565354 DPPA2Q7Z7J5 298 aa15.01□□□□□ -0.01
CLN3-217ENST00000565354 NMD3Q96D46 503 aaKnown RBP15.01□□□□□ -0.01
CLN3-217ENST00000565354 PERPQ96FX8 193 aa15.01□□□□□ -0.01
CLN3-217ENST00000565354 RADILQ96JH8 1075 aa15.01□□□□□ -0.01
CLN3-217ENST00000565354 SLC38A2Q96QD8 506 aa15.01□□□□□ -0.01
CLN3-217ENST00000565354 CCL19Q99731 98 aa15.01□□□□□ -0.01
CLN3-217ENST00000565354 PKP2Q99959 881 aa15.01□□□□□ -0.01
CLN3-217ENST00000565354 SIAEQ9HAT2 523 aa15.01□□□□□ -0.01
CLN3-217ENST00000565354 S100A14Q9HCY8 104 aa15.01□□□□□ -0.01
CLN3-217ENST00000565354 CCNB1IP1Q9NPC3 277 aa15.01□□□□□ -0.01
CLN3-217ENST00000565354 KRT84Q9NSB2 600 aa15.01□□□□□ -0.01
CLN3-217ENST00000565354 KLHL21Q9UJP4 597 aa15.01□□□□□ -0.01
CLN3-217ENST00000565354 RAI1Q7Z5J4 1906 aaPredicted RBP15.01□□□□□ -0.01
CLN3-217ENST00000565354 USF3Q68DE3 2245 aa15□□□□□ -0.01
CLN3-217ENST00000565354 ANKRD65E5RJM6 399 aa15□□□□□ -0.01
CLN3-217ENST00000565354 PLAUP00749 431 aa15□□□□□ -0.01
CLN3-217ENST00000565354 CTLA4P16410 223 aa15□□□□□ -0.01
CLN3-217ENST00000565354 LOXP28300 417 aaPredicted RBP15□□□□□ -0.01
CLN3-217ENST00000565354 RAB1AP62820 205 aa15□□□□□ -0.01
CLN3-217ENST00000565354 PGGHGQ32M88 737 aa15□□□□□ -0.01
CLN3-217ENST00000565354 SLC27A4Q6P1M0 643 aa15□□□□□ -0.01
CLN3-217ENST00000565354 LNX2Q8N448 690 aa15□□□□□ -0.01
CLN3-217ENST00000565354 OR4Q3Q8NH05 313 aa15□□□□□ -0.01
CLN3-217ENST00000565354 SNX18Q96RF0 628 aa15□□□□□ -0.01
CLN3-217ENST00000565354 NUAK2Q9H093 628 aa15□□□□□ -0.01
CLN3-217ENST00000565354 SRA1Q9HD15 236 aaKnown RBP15□□□□□ -0.01
CLN3-217ENST00000565354 RPRD1BQ9NQG5 326 aaKnown RBP15□□□□□ -0.01
CLN3-217ENST00000565354 REV1Q9UBZ9 1251 aa15□□□□□ -0.01
CLN3-217ENST00000565354 FBXL3Q9UKT7 428 aa15□□□□□ -0.01
CLN3-217ENST00000565354 OAZ3Q9UMX2 235 aa15□□□□□ -0.01
CLN3-217ENST00000565354 COA3Q9Y2R0 106 aaPredicted RBP15□□□□□ -0.01
CLN3-217ENST00000565354 UGT2A1Q9Y4X1 527 aa15□□□□□ -0.01
CLN3-217ENST00000565354 ANK3Q12955 4377 aaKnown RBP14.99□□□□□ -0.01
CLN3-217ENST00000565354 IGHV1-18A0A0C4DH31 117 aa14.99□□□□□ -0.01
CLN3-217ENST00000565354 RIIAD1A6NNX1 92 aa14.99□□□□□ -0.01
CLN3-217ENST00000565354 H3BNX3 289 aa14.99□□□□□ -0.01
CLN3-217ENST00000565354 CRLF1O75462 422 aa14.99□□□□□ -0.01
CLN3-217ENST00000565354 BAG2O95816 211 aa14.99□□□□□ -0.01
CLN3-217ENST00000565354 CRYAAP02489 173 aa14.99□□□□□ -0.01
CLN3-217ENST00000565354 TP53P04637 393 aaPredicted RBP14.99□□□□□ -0.01
CLN3-217ENST00000565354 PATE4P0C8F1 98 aa14.99□□□□□ -0.01
CLN3-217ENST00000565354 ZNF3P17036 446 aa14.99□□□□□ -0.01
CLN3-217ENST00000565354 MSR1P21757 451 aa14.99□□□□□ -0.01
CLN3-217ENST00000565354 LAP3P28838 519 aa14.99□□□□□ -0.01
CLN3-217ENST00000565354 GRK5P34947 590 aa14.99□□□□□ -0.01
CLN3-217ENST00000565354 GIPRP48546 466 aa14.99□□□□□ -0.01
CLN3-217ENST00000565354 DAPP51397 102 aa14.99□□□□□ -0.01
CLN3-217ENST00000565354 CDH11P55287 796 aa14.99□□□□□ -0.01
CLN3-217ENST00000565354 HSF2Q03933 536 aa14.99□□□□□ -0.01
CLN3-217ENST00000565354 PLP2Q04941 152 aa14.99□□□□□ -0.01
CLN3-217ENST00000565354 GINS1Q14691 196 aa14.99□□□□□ -0.01
CLN3-217ENST00000565354 ETFDHQ16134 617 aa14.99□□□□□ -0.01
CLN3-217ENST00000565354 C3orf36Q3SXR2 165 aa14.99□□□□□ -0.01
CLN3-217ENST00000565354 FAHD1Q6P587 224 aa14.99□□□□□ -0.01
CLN3-217ENST00000565354 IQCF1Q8N6M8 205 aa14.99□□□□□ -0.01
CLN3-217ENST00000565354 FAM169BQ8N8A8 192 aa14.99□□□□□ -0.01
CLN3-217ENST00000565354 KBTBD8Q8NFY9 601 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms