RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 CCNIQ14094 377 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 ENDOGQ14249 297 aaKnown RBP9.25□□□□□ -0.93
VPS39-208ENST00000564994 NKPD1Q17RQ9 610 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 CR1LQ2VPA4 569 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 THEM4Q5T1C6 240 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 ZNF730Q6ZMV8 503 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 TMPRSS11FQ6ZWK6 438 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 MBOAT2Q6ZWT7 520 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 FKBP9P1Q75LS8 142 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 ZNF101Q8IZC7 436 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 RNF113BQ8IZP6 322 aaKnown RBP9.25□□□□□ -0.93
VPS39-208ENST00000564994 ICA1LQ8NDH6 482 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 OR1J2Q8NGS2 313 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 OR1J1Q8NGS3 322 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 SYNPRQ8TBG9 265 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 SLC7A13Q8TCU3 470 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 C11orf40Q8WZ69 217 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 RDH5Q92781 318 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 HPS1Q92902 700 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 RBP7Q96R05 134 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 KCTD14Q9BQ13 255 aaPredicted RBP9.25□□□□□ -0.93
VPS39-208ENST00000564994 BCL2L14Q9BZR8 327 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 RACGAP1Q9H0H5 632 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 WNT5BQ9H1J7 359 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 KCNN2Q9H2S1 579 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 CCNB1IP1Q9NPC3 277 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 ZNF275Q9NSD4 429 aaPredicted RBP9.25□□□□□ -0.93
VPS39-208ENST00000564994 EGFL7Q9UHF1 273 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 ADAM18Q9Y3Q7 739 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 WNK2Q9Y3S1 2297 aa9.25□□□□□ -0.93
VPS39-208ENST00000564994 TANC2Q9HCD6 1990 aa9.24□□□□□ -0.93
VPS39-208ENST00000564994 C5orf49A4QMS7 147 aa9.24□□□□□ -0.93
VPS39-208ENST00000564994 SRD5A1P18405 259 aa9.24□□□□□ -0.93
VPS39-208ENST00000564994 ACHEP22303 614 aa9.24□□□□□ -0.93
VPS39-208ENST00000564994 GPR6P46095 362 aaPredicted RBP9.24□□□□□ -0.93
VPS39-208ENST00000564994 SLC9A3P48764 834 aa9.24□□□□□ -0.93
VPS39-208ENST00000564994 MRPS11P82912 194 aaKnown RBP9.24□□□□□ -0.93
VPS39-208ENST00000564994 SRSF2Q01130 221 aaKnown RBP9.24□□□□□ -0.93
VPS39-208ENST00000564994 GLO1Q04760 184 aa9.24□□□□□ -0.93
VPS39-208ENST00000564994 ANKDD1AQ495B1 522 aa9.24□□□□□ -0.93
VPS39-208ENST00000564994 FAM205BPQ63HN1 556 aa9.24□□□□□ -0.93
VPS39-208ENST00000564994 FAM122BQ7Z309 247 aa9.24□□□□□ -0.93
VPS39-208ENST00000564994 FAM86B1Q8N7N1 296 aa9.24□□□□□ -0.93
VPS39-208ENST00000564994 LINC01356Q8N9X3 169 aa9.24□□□□□ -0.93
VPS39-208ENST00000564994 FAM156AQ8NDB6 213 aa9.24□□□□□ -0.93
VPS39-208ENST00000564994 CLDND2Q8NHS1 167 aa9.24□□□□□ -0.93
VPS39-208ENST00000564994 FNDC8Q8TC99 324 aa9.24□□□□□ -0.93
VPS39-208ENST00000564994 FAM162AQ96A26 154 aa9.24□□□□□ -0.93
VPS39-208ENST00000564994 FAM46AQ96IP4 442 aaKnown RBP9.24□□□□□ -0.93
VPS39-208ENST00000564994 Q96M85 177 aa9.24□□□□□ -0.93
VPS39-208ENST00000564994 OR2H1Q9GZK4 316 aa9.24□□□□□ -0.93
VPS39-208ENST00000564994 LRMDAQ9H2I8 198 aa9.24□□□□□ -0.93
VPS39-208ENST00000564994 NARFLQ9H6Q4 476 aa9.24□□□□□ -0.93
VPS39-208ENST00000564994 NMNAT1Q9HAN9 279 aaPredicted RBP9.24□□□□□ -0.93
VPS39-208ENST00000564994 HINT3Q9NQE9 182 aaKnown RBP9.24□□□□□ -0.93
VPS39-208ENST00000564994 NDUFAF4Q9P032 175 aa9.24□□□□□ -0.93
VPS39-208ENST00000564994 ENPP4Q9Y6X5 453 aa9.24□□□□□ -0.93
VPS39-208ENST00000564994 ARHGAP32A7KAX9 2087 aa9.24□□□□□ -0.93
VPS39-208ENST00000564994 A0A1W2PPL8 197 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 GMNCA6NCL1 334 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 A6NIZ1 184 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 FAM157AC9JC47 383 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 NDUFAB1O14561 156 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 IMPA2O14732 288 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 CDC14BO60729 498 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 DIRAS1O95057 198 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 IGHV3-13P01766 116 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 CD14P08571 375 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 CST2P09228 141 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 NR2C1P13056 603 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 THBS2P35442 1172 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 MPV17P39210 176 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 LIMS1P48059 325 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 GDI2P50395 445 aaKnown RBP9.23□□□□□ -0.93
VPS39-208ENST00000564994 SELENOVP59797 346 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 RAP1BP61224 184 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 RAP1AP62834 184 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 CCL8P80075 99 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 KRTAP24-1Q3LI83 254 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 ZBED5Q49AG3 693 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 MESTQ5EB52 335 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 SPATA46Q5T0L3 261 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 GLYATQ6IB77 296 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 ZNF774Q6NX45 483 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 UGT2A3Q6UWM9 527 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 RFPL4BQ6ZWI9 263 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 RNF148Q8N7C7 305 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 SLC25A40Q8TBP6 338 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 TMEM158Q8WZ71 300 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 CMTM5Q96DZ9 223 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 MARS2Q96GW9 593 aaKnown RBP9.23□□□□□ -0.93
VPS39-208ENST00000564994 C7orf34Q96L11 122 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 ZNF416Q9BWM5 594 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 FAM107BQ9H098 131 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 ANKRD19PQ9H560 264 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 EMC7Q9NPA0 242 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 POLE4Q9NR33 117 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 SLCO1C1Q9NYB5 712 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 NKIRAS2Q9NYR9 191 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 SIGLEC7Q9Y286 467 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms