RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 RNF128Q8TEB7 428 aa11.28□□□□□ -0.6
USP3-213ENST00000559711 C11orf40Q8WZ69 217 aa11.28□□□□□ -0.6
USP3-213ENST00000559711 HSD17B8Q92506 261 aa11.28□□□□□ -0.6
USP3-213ENST00000559711 NSMAFQ92636 917 aa11.28□□□□□ -0.6
USP3-213ENST00000559711 MCHR2Q969V1 340 aa11.28□□□□□ -0.6
USP3-213ENST00000559711 SCMH1Q96GD3 660 aa11.28□□□□□ -0.6
USP3-213ENST00000559711 WDFY2Q96P53 400 aa11.28□□□□□ -0.6
USP3-213ENST00000559711 ZNF385AQ96PM9 386 aaKnown RBP11.28□□□□□ -0.6
USP3-213ENST00000559711 MROQ9BYG7 248 aa11.28□□□□□ -0.6
USP3-213ENST00000559711 ELOVL3Q9HB03 270 aa11.28□□□□□ -0.6
USP3-213ENST00000559711 CNTRLQ7Z7A1 2325 aa11.28□□□□□ -0.6
USP3-213ENST00000559711 FAM186AA6NE01 2351 aa11.28□□□□□ -0.6
USP3-213ENST00000559711 OR4C45A6NMZ5 311 aa11.27□□□□□ -0.6
USP3-213ENST00000559711 TMCC2O75069 709 aa11.27□□□□□ -0.6
USP3-213ENST00000559711 CFL1P23528 166 aaKnown RBP11.27□□□□□ -0.6
USP3-213ENST00000559711 RFC3P40938 356 aa11.27□□□□□ -0.6
USP3-213ENST00000559711 MEOX1P50221 254 aa11.27□□□□□ -0.6
USP3-213ENST00000559711 CCR9P51686 369 aa11.27□□□□□ -0.6
USP3-213ENST00000559711 KCNMB1Q16558 191 aa11.27□□□□□ -0.6
USP3-213ENST00000559711 PDSS1Q5T2R2 415 aa11.27□□□□□ -0.6
USP3-213ENST00000559711 FAM27D1Q5T7N8 215 aa11.27□□□□□ -0.6
USP3-213ENST00000559711 C16orf87Q6PH81 154 aa11.27□□□□□ -0.6
USP3-213ENST00000559711 DEGS2Q6QHC5 323 aa11.27□□□□□ -0.6
USP3-213ENST00000559711 IGFL2Q6UWQ7 119 aa11.27□□□□□ -0.6
USP3-213ENST00000559711 LRRN1Q6UXK5 716 aa11.27□□□□□ -0.6
USP3-213ENST00000559711 TMEM123Q8N131 208 aa11.27□□□□□ -0.6
USP3-213ENST00000559711 OR13C5Q8NGS8 318 aa11.27□□□□□ -0.6
USP3-213ENST00000559711 OR52N5Q8NH56 324 aa11.27□□□□□ -0.6
USP3-213ENST00000559711 OR10D3Q8NH80 312 aa11.27□□□□□ -0.6
USP3-213ENST00000559711 ST7LQ8TDW4 575 aa11.27□□□□□ -0.6
USP3-213ENST00000559711 AP3S1Q92572 193 aa11.27□□□□□ -0.6
USP3-213ENST00000559711 TMEM54Q969K7 222 aa11.27□□□□□ -0.6
USP3-213ENST00000559711 INTS12Q96CB8 462 aaKnown RBP11.27□□□□□ -0.6
USP3-213ENST00000559711 DCBLD2Q96PD2 775 aa11.27□□□□□ -0.6
USP3-213ENST00000559711 OR2M2Q96R28 347 aa11.27□□□□□ -0.6
USP3-213ENST00000559711 TIGARQ9NQ88 270 aa11.27□□□□□ -0.6
USP3-213ENST00000559711 GLTPQ9NZD2 209 aa11.27□□□□□ -0.6
USP3-213ENST00000559711 CYB5R1Q9UHQ9 305 aa11.27□□□□□ -0.6
USP3-213ENST00000559711 MED12Q93074 2177 aa11.27□□□□□ -0.61
USP3-213ENST00000559711 TRABD2BA6NFA1 517 aa11.27□□□□□ -0.61
USP3-213ENST00000559711 ZNF716A6NP11 495 aa11.27□□□□□ -0.61
USP3-213ENST00000559711 ZNF891A8MT65 544 aaPredicted RBP11.27□□□□□ -0.61
USP3-213ENST00000559711 CXCL13O43927 109 aa11.27□□□□□ -0.61
USP3-213ENST00000559711 ZNF254O75437 659 aa11.27□□□□□ -0.61
USP3-213ENST00000559711 ARL6IP5O75915 188 aa11.27□□□□□ -0.61
USP3-213ENST00000559711 CELA3AP09093 270 aa11.27□□□□□ -0.61
USP3-213ENST00000559711 QDPRP09417 244 aa11.27□□□□□ -0.61
USP3-213ENST00000559711 MYL9P24844 172 aa11.27□□□□□ -0.61
USP3-213ENST00000559711 TNFSF8P32971 234 aa11.27□□□□□ -0.61
USP3-213ENST00000559711 MAGEA5P43359 124 aa11.27□□□□□ -0.61
USP3-213ENST00000559711 LHX2P50458 406 aa11.27□□□□□ -0.61
USP3-213ENST00000559711 CAV3P56539 151 aa11.27□□□□□ -0.61
USP3-213ENST00000559711 ARG2P78540 354 aa11.27□□□□□ -0.61
USP3-213ENST00000559711 PLGLB1Q02325 96 aa11.27□□□□□ -0.61
USP3-213ENST00000559711 RASGEF1BQ0VAM2 473 aa11.27□□□□□ -0.61
USP3-213ENST00000559711 C10orf128Q5T292 105 aa11.27□□□□□ -0.61
USP3-213ENST00000559711 CARD17Q5XLA6 110 aa11.27□□□□□ -0.61
USP3-213ENST00000559711 KRT77Q7Z794 578 aa11.27□□□□□ -0.61
USP3-213ENST00000559711 OR5AK2Q8NH90 309 aa11.27□□□□□ -0.61
USP3-213ENST00000559711 RGP1Q92546 391 aaPredicted RBP11.27□□□□□ -0.61
USP3-213ENST00000559711 CPNE4Q96A23 557 aaPredicted RBP11.27□□□□□ -0.61
USP3-213ENST00000559711 C4orf45Q96LM5 186 aa11.27□□□□□ -0.61
USP3-213ENST00000559711 ARPC4-TTLL3A0A0A6YYG9 625 aa11.26□□□□□ -0.61
USP3-213ENST00000559711 TMEM212A6NML5 194 aa11.26□□□□□ -0.61
USP3-213ENST00000559711 FAM166BA8MTA8 275 aa11.26□□□□□ -0.61
USP3-213ENST00000559711 ZNF879B4DU55 563 aa11.26□□□□□ -0.61
USP3-213ENST00000559711 PTPRBP23467 1997 aa11.26□□□□□ -0.61
USP3-213ENST00000559711 EIF1AXP47813 144 aaKnown RBP11.26□□□□□ -0.61
USP3-213ENST00000559711 CSNK1A1P48729 337 aa11.26□□□□□ -0.61
USP3-213ENST00000559711 TNFSF10P50591 281 aa11.26□□□□□ -0.61
USP3-213ENST00000559711 CCL11P51671 97 aa11.26□□□□□ -0.61
USP3-213ENST00000559711 RIDAP52758 137 aaKnown RBP11.26□□□□□ -0.61
USP3-213ENST00000559711 CDC20Q12834 499 aa11.26□□□□□ -0.61
USP3-213ENST00000559711 BCL2A1Q16548 175 aa11.26□□□□□ -0.61
USP3-213ENST00000559711 ZNF766Q5HY98 468 aa11.26□□□□□ -0.61
USP3-213ENST00000559711 ABLIM2Q6H8Q1 611 aa11.26□□□□□ -0.61
USP3-213ENST00000559711 DCXRQ7Z4W1 244 aa11.26□□□□□ -0.61
USP3-213ENST00000559711 NR2C2APQ86WQ0 139 aa11.26□□□□□ -0.61
USP3-213ENST00000559711 UBQLNLQ8IYU4 475 aa11.26□□□□□ -0.61
USP3-213ENST00000559711 PRSS35Q8N3Z0 413 aa11.26□□□□□ -0.61
USP3-213ENST00000559711 PARP16Q8N5Y8 322 aa11.26□□□□□ -0.61
USP3-213ENST00000559711 FDCSPQ8NFU4 85 aa11.26□□□□□ -0.61
USP3-213ENST00000559711 OR10H5Q8NGA6 315 aa11.26□□□□□ -0.61
USP3-213ENST00000559711 RNF133Q8WVZ7 376 aa11.26□□□□□ -0.61
USP3-213ENST00000559711 ATF6BQ99941 703 aa11.26□□□□□ -0.61
USP3-213ENST00000559711 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.26□□□□□ -0.61
USP3-213ENST00000559711 ACKR4Q9NPB9 350 aa11.26□□□□□ -0.61
USP3-213ENST00000559711 MED13Q9UHV7 2174 aa11.26□□□□□ -0.61
USP3-213ENST00000559711 FOXD3Q9UJU5 478 aaPredicted RBP11.26□□□□□ -0.61
USP3-213ENST00000559711 CDV3Q9UKY7 258 aaKnown RBP11.26□□□□□ -0.61
USP3-213ENST00000559711 RCE1Q9Y256 329 aa11.26□□□□□ -0.61
USP3-213ENST00000559711 CMAHPQ9Y471 501 aa11.26□□□□□ -0.61
USP3-213ENST00000559711 FLVCR1Q9Y5Y0 555 aa11.26□□□□□ -0.61
USP3-213ENST00000559711 A0A087WV48 116 aa11.25□□□□□ -0.61
USP3-213ENST00000559711 TRBV5-5A0A0J9YX44 114 aa11.25□□□□□ -0.61
USP3-213ENST00000559711 A0A1B0GTH9 108 aa11.25□□□□□ -0.61
USP3-213ENST00000559711 SMIM30A4D0T7 59 aa11.25□□□□□ -0.61
USP3-213ENST00000559711 CYTIPO60759 359 aa11.25□□□□□ -0.61
USP3-213ENST00000559711 SRSF10O75494 262 aaKnown RBP11.25□□□□□ -0.61
USP3-213ENST00000559711 NCR1O76036 304 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms