RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 FAM27BQ5VT28 67 aa8.1□□□□□ -1.11
LDLR-210ENST00000559340 IZUMO2Q6UXV1 221 aa8.1□□□□□ -1.11
LDLR-210ENST00000559340 LINGO2Q7L985 606 aa8.1□□□□□ -1.11
LDLR-210ENST00000559340 SHFQ7M4L6 423 aa8.1□□□□□ -1.11
LDLR-210ENST00000559340 SLC16A14Q7RTX9 510 aa8.1□□□□□ -1.11
LDLR-210ENST00000559340 ALDH16A1Q8IZ83 802 aa8.1□□□□□ -1.11
LDLR-210ENST00000559340 C8orf59Q8N0T1 100 aaPredicted RBP8.1□□□□□ -1.11
LDLR-210ENST00000559340 OR2AJ1Q8NGZ0 328 aa8.1□□□□□ -1.11
LDLR-210ENST00000559340 FAM222BQ8WU58 562 aa8.1□□□□□ -1.11
LDLR-210ENST00000559340 PTP4A1Q93096 173 aa8.1□□□□□ -1.11
LDLR-210ENST00000559340 S100PBPQ96BU1 408 aa8.1□□□□□ -1.11
LDLR-210ENST00000559340 DACH2Q96NX9 599 aa8.1□□□□□ -1.11
LDLR-210ENST00000559340 IL4I1Q96RQ9 567 aa8.1□□□□□ -1.11
LDLR-210ENST00000559340 MYCBPQ99417 103 aaPredicted RBP8.1□□□□□ -1.11
LDLR-210ENST00000559340 MED18Q9BUE0 208 aa8.1□□□□□ -1.11
LDLR-210ENST00000559340 NMNAT2Q9BZQ4 307 aa8.1□□□□□ -1.11
LDLR-210ENST00000559340 HINT3Q9NQE9 182 aaKnown RBP8.1□□□□□ -1.11
LDLR-210ENST00000559340 POLE4Q9NR33 117 aa8.1□□□□□ -1.11
LDLR-210ENST00000559340 WARS2Q9UGM6 360 aaKnown RBP8.1□□□□□ -1.11
LDLR-210ENST00000559340 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP8.1□□□□□ -1.11
LDLR-210ENST00000559340 POLR1DQ9Y2S0 133 aa8.1□□□□□ -1.11
LDLR-210ENST00000559340 ANKHD1Q8IWZ3 2542 aaKnown RBP8.1□□□□□ -1.11
LDLR-210ENST00000559340 USP9YO00507 2555 aaPredicted RBP8.09□□□□□ -1.11
LDLR-210ENST00000559340 USP9XQ93008 2570 aaPredicted RBP8.09□□□□□ -1.11
LDLR-210ENST00000559340 IGLV1-36A0A0B4J1U3 117 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 SH3D21A4FU49 640 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 FAM183AA6NL82 134 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 E9PQ18 207 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 DLGAP1O14490 977 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 PRKYO43930 277 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 GOSR1O95249 250 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 RAB36O95755 333 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 B4GALT1P15291 398 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 GSTT1P30711 240 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 PYCR1P32322 319 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 ATP6V1E1P36543 226 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 KIR2DL3P43628 341 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 AQP4P55087 323 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 FOXG1P55316 489 aaPredicted RBP8.09□□□□□ -1.11
LDLR-210ENST00000559340 CSNK2BP67870 215 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 EFNB1P98172 346 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 TEKQ02763 1124 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 TFF3Q07654 80 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 SCRN3Q0VDG4 424 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 POU4F2Q12837 409 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 APOFQ13790 326 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 PPA1Q15181 289 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 ETFDHQ16134 617 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 C3orf36Q3SXR2 165 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 ZNF691Q5VV52 312 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 MEPCEQ7L2J0 689 aaKnown RBP8.09□□□□□ -1.11
LDLR-210ENST00000559340 WDFY1Q8IWB7 410 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 FAM169BQ8N8A8 192 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 IL17RDQ8NFM7 739 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 OR9Q1Q8NGQ5 310 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 OR6K6Q8NGW6 343 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 RHOXF1Q8NHV9 184 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 TFAP2CQ92754 450 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 TSSK2Q96PF2 358 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 MNTQ99583 582 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 TEAD3Q99594 435 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 SPOCK3Q9BQ16 436 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 C1orf198Q9H425 327 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 PLEKHB1Q9UF11 243 aaPredicted RBP8.09□□□□□ -1.11
LDLR-210ENST00000559340 RAB26Q9ULW5 256 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 UGT2A1Q9Y4X1 527 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 PCDHGB1Q9Y5G3 927 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 TIMM10BQ9Y5J6 103 aa8.09□□□□□ -1.11
LDLR-210ENST00000559340 FLNCQ14315 2725 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 A0A096LPE4 126 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 IGKV1D-43A0A0B4J1Z2 117 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 IQCMA0A1B0GVH7 501 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 A0A1W2PPZ6 126 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 IRGMA1A4Y4 181 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 EPXP11678 715 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 CD79AP11912 226 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 CBR1P16152 277 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 HTR1FP30939 366 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 CDAP32320 146 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 ENTPD1P49961 510 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 CDH11P55287 796 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 RAB1AP62820 205 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 ADAM8P78325 824 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 AQP6Q13520 282 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 CDSNQ15517 529 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 TSC22D1Q15714 1073 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 GSG1Q2KHT4 349 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 HIKESHIQ53FT3 197 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 TEX30Q5JUR7 227 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 AADACL4Q5VUY2 407 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 MEX3BQ6ZN04 569 aaKnown RBP8.08□□□□□ -1.12
LDLR-210ENST00000559340 THAP5Q7Z6K1 395 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 SKA3Q8IX90 412 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 DMRTC2Q8IXT2 367 aaPredicted RBP8.08□□□□□ -1.12
LDLR-210ENST00000559340 LRRC18Q8N456 261 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 ZNF454Q8N9F8 522 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 WDR31Q8NA23 367 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 GJC3Q8NFK1 279 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 SLC26A10Q8NG04 563 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 OR1J2Q8NGS2 313 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms