RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 MYO18BQ8IUG5 2567 aa6.93□□□□□ -1.3
LIMA1-216ENST00000552909 A0A1W2PR48 441 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 URADA6NGE7 173 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 GLOD5A6NK44 160 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 IDSB3KWA1 339 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 SOCS6O14544 535 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 GOSR2O14653 212 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 TO15178 435 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 KRT33AO76009 404 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 ATP1B1P05026 303 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 FBP1P09467 338 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 SELLP14151 372 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 PRF1P14222 555 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 CERS1P27544 350 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 IFNGR2P38484 337 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 MECP2P51608 486 aaKnown RBP6.92□□□□□ -1.3
LIMA1-216ENST00000552909 ART1P52961 327 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 H2BFSP57053 126 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 RPS26P62854 115 aaKnown RBP6.92□□□□□ -1.3
LIMA1-216ENST00000552909 TRA2BP62995 288 aaKnown RBP6.92□□□□□ -1.3
LIMA1-216ENST00000552909 LSM11P83369 360 aaKnown RBP eCLIP6.92□□□□□ -1.3
LIMA1-216ENST00000552909 PDE7AQ13946 482 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 SMCO1Q147U7 214 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 TRAM2Q15035 370 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 UBE2NLQ5JXB2 153 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 OLFML2AQ68BL7 652 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 C18orf63Q68DL7 685 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 OR7E24Q6IFN5 339 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 HEPHL1Q6MZM0 1159 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 TNFAIP8L2Q6P589 184 aaPredicted RBP6.92□□□□□ -1.3
LIMA1-216ENST00000552909 ZNF843Q8N446 348 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 ACBD7Q8N6N7 88 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 SIRT6Q8N6T7 355 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 MORN4Q8NDC4 146 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 OR51G2Q8NGK0 314 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 ZNF671Q8TAW3 534 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 ABHD4Q8TB40 342 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 GAL3ST3Q96A11 431 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 WFDC6Q9BQY6 131 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 QRSL1Q9H0R6 528 aaKnown RBP6.92□□□□□ -1.3
LIMA1-216ENST00000552909 C5AR2Q9P296 337 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 KLHL9Q9P2J3 617 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 MKL2Q9ULH7 1088 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 ATG4BQ9Y4P1 393 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 TRAPPC13A5PLN9 417 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 H0YIG0 161 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 GABARAPH6UMI1 98 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 M0R3H8 397 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 UBE2CO00762 179 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 SURF4O15260 269 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 EIF4E2O60573 245 aaKnown RBP6.92□□□□□ -1.3
LIMA1-216ENST00000552909 PRKRAO75569 313 aaKnown RBP6.92□□□□□ -1.3
LIMA1-216ENST00000552909 NDUFB6O95139 128 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 AKR7A3O95154 331 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 CH25HO95992 272 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 HEXAP06865 529 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 CD63P08962 238 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 SMIM10L1P0DMW3 83 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 CBR1P16152 277 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 ADCYAP1P18509 176 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 ATF1P18846 271 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 ACHEP22303 614 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 NOS3P29474 1203 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 PGDP52209 483 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 ARFIP1P53367 373 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 BLOC1S1P78537 153 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 SORDQ00796 357 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 SLC3A1Q07837 685 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 PDZK1IP1Q13113 114 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 ZNF124Q15973 351 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 RNF212Q495C1 297 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 DCAF10Q5QP82 559 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 ABHD13Q7L211 337 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 PXKQ7Z7A4 578 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 MEX3DQ86XN8 651 aaKnown RBP6.92□□□□□ -1.3
LIMA1-216ENST00000552909 BOLLQ8N9W6 283 aaKnown RBP6.92□□□□□ -1.3
LIMA1-216ENST00000552909 BBS1Q8NFJ9 593 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 FDCSPQ8NFU4 85 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 OR52B4Q8NGK2 314 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 OR52I2Q8NH67 350 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 BRIX1Q8TDN6 353 aaKnown RBP6.92□□□□□ -1.3
LIMA1-216ENST00000552909 EDARADDQ8WWZ3 215 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 EXOSC8Q96B26 276 aaKnown RBP6.92□□□□□ -1.3
LIMA1-216ENST00000552909 PEX11GQ96HA9 241 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 SMIM10Q96HG1 83 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 RSPO3Q9BXY4 272 aaPredicted RBP6.92□□□□□ -1.3
LIMA1-216ENST00000552909 OR51I1Q9H343 314 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 SEBOXQ9HB31 216 aaPredicted RBP6.92□□□□□ -1.3
LIMA1-216ENST00000552909 SDHAF3Q9NRP4 125 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 MAN2C1Q9NTJ4 1040 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 MED17Q9NVC6 651 aa6.92□□□□□ -1.3
LIMA1-216ENST00000552909 ZNF629Q9UEG4 869 aaPredicted RBP6.92□□□□□ -1.3
LIMA1-216ENST00000552909 A0A0D9SG52 128 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 MEX3AA1L020 520 aaKnown RBP6.91□□□□□ -1.3
LIMA1-216ENST00000552909 OR14I1A6ND48 311 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 C5orf52A6NGY3 159 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 TMEM200CA6NKL6 621 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 PLPP2O43688 288 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 EPXP11678 715 aa6.91□□□□□ -1.3
LIMA1-216ENST00000552909 FOLR2P14207 255 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms