RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 AMY2AP04746 511 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 F13BP05160 661 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 ZNF44P15621 663 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 CD1CP29017 333 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 SLC6A6P31641 620 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 HAAOP46952 286 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 POU4F2Q12837 409 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 PPP1R1AQ13522 171 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 ERV3-1Q14264 604 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 ZNHIT3Q15649 155 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-214ENST00000552783 ELAVL1Q15717 326 aaKnown RBP4.39□□□□□ -1.71
LIMA1-214ENST00000552783 MPPED2Q15777 294 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 TMEM35AQ53FP2 167 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 OR52W1Q6IF63 320 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 CDPF1Q6NVV7 123 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 ARHGAP11AQ6P4F7 1023 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 LEG1Q6P5S2 330 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 ZNF600Q6ZNG1 722 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 MDGA2Q7Z553 956 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 ADAD2Q8NCV1 583 aaKnown RBP4.39□□□□□ -1.71
LIMA1-214ENST00000552783 RPP25Q9BUL9 199 aaKnown RBP4.39□□□□□ -1.71
LIMA1-214ENST00000552783 RAB11FIP5Q9BXF6 653 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 NMNAT2Q9BZQ4 307 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 LAT2Q9GZY6 243 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 CST11Q9H112 138 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 PIGMQ9H3S5 423 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 GAREM1Q9H706 876 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 FN3KRPQ9HA64 309 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 SLC2A4RGQ9NR83 387 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 WBP1LQ9NX94 342 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 SLC22A13Q9Y226 551 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 PCNX3Q9H6A9 2034 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 UNC13CQ8NB66 2214 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 A0A0B4J2A0 478 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 TRBV5-5A0A0J9YX44 114 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 PRAMEF26H0Y7S4 382 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 H0YIZ8 118 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 BLOC1S5-TXNDC5H3BN57 136 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 GPRIN2O60269 458 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 CTSVO60911 334 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 RAB3DO95716 219 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 CTSBP07858 339 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 THBS1P07996 1170 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 FAM157CP0CG43 387 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 MUC1P15941 1255 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-214ENST00000552783 MAPK3P27361 379 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-214ENST00000552783 KIR3DL2P43630 455 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 PPT1P50897 306 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 DPTQ07507 201 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 ALKBH1Q13686 389 aaKnown RBP4.39□□□□□ -1.71
LIMA1-214ENST00000552783 INPP5JQ15735 1006 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-214ENST00000552783 GFOD2Q3B7J2 385 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 ITPRIPL2Q3MIP1 535 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 C10orf91Q5T1B1 145 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 ZNF813Q6ZN06 617 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 ZNF627Q7L945 461 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 DPY19L4Q7Z388 723 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 SLC35F3Q8IY50 421 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 POMGNT2Q8NAT1 580 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 CAMKVQ8NCB2 501 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 OR51A2Q8NGJ7 313 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 ELP5Q8TE02 316 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 CASTOR1Q8WTX7 329 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 ISOC2Q96AB3 205 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 MOGAT1Q96PD6 335 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 GAL3ST4Q96RP7 486 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 CLCC1Q96S66 551 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 PDCD10Q9BUL8 212 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 APOOQ9BUR5 198 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 ATG5Q9H1Y0 275 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 HRH4Q9H3N8 390 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 TREM1Q9NP99 234 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 DNAJB12Q9NXW2 375 aaKnown RBP4.39□□□□□ -1.71
LIMA1-214ENST00000552783 GHRLQ9UBU3 117 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 CGGBP1Q9UFW8 167 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-214ENST00000552783 SHPKQ9UHJ6 478 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 KLK13Q9UKR3 277 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 IKZF2Q9UKS7 526 aa4.39□□□□□ -1.71
LIMA1-214ENST00000552783 NOP16Q9Y3C1 178 aaKnown RBP4.39□□□□□ -1.71
LIMA1-214ENST00000552783 A0A0D9SG52 128 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 TMEM235A6NFC5 223 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 EFCAB7A8K855 629 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 K7EQS6 105 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 FGF16O43320 207 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 LMX1BO60663 402 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 EIF1BO60739 113 aaKnown RBP4.38□□□□□ -1.71
LIMA1-214ENST00000552783 NDUFB2O95178 105 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 PNPP00491 289 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 IFNGP01579 166 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 DBIP07108 87 aaKnown RBP4.38□□□□□ -1.71
LIMA1-214ENST00000552783 CSF1P09603 554 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 ZNF806P0C7X5 589 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 DAOP14920 347 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 PRSS3P35030 304 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 DRD3P35462 400 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 EIF1P41567 113 aaKnown RBP4.38□□□□□ -1.71
LIMA1-214ENST00000552783 ARL4DP49703 201 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 HGFACQ04756 655 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 EXOSC6Q5RKV6 272 aaKnown RBP4.38□□□□□ -1.71
LIMA1-214ENST00000552783 FBXO42Q6P3S6 717 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms