RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 C12orf45Q8N5I9 185 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-212ENST00000552491 BPIFCQ8NFQ6 507 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 OR13C8Q8NGS7 320 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 GPR148Q8TDV2 347 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 RELTQ969Z4 430 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 ELSPBP1Q96BH3 223 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 ZC3H10Q96K80 434 aaKnown RBP4.89□□□□□ -1.63
LIMA1-212ENST00000552491 RTN4RQ9BZR6 473 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 COMMD4Q9H0A8 199 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 ATG5Q9H1Y0 275 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 IL23AQ9NPF7 189 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 CDV3Q9UKY7 258 aaKnown RBP4.89□□□□□ -1.63
LIMA1-212ENST00000552491 ERVK-19Q9WJR5 959 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 YBX2Q9Y2T7 364 aaKnown RBP4.89□□□□□ -1.63
LIMA1-212ENST00000552491 ATG2AQ2TAZ0 1938 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 LRP4O75096 1905 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 A0A0D9SG52 128 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 A0A1B0GTI1 187 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 TMEM82A0PJX8 343 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 RNF222A6NCQ9 220 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 OR5H14A6NHG9 310 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 ELOA3DA6NLF2 546 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-212ENST00000552491 TMEM212A6NML5 194 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 MPTX1A8MV57 137 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 SLC17A2O00624 439 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 ABCD4O14678 606 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 CLPSP04118 112 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 ST6GAL1P15907 406 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 ZNF28P17035 718 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 MAOAP21397 527 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 AGTR1P30556 359 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 CD96P40200 585 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 GRK6P43250 576 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 GPR3P46089 330 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 CCR4P51679 360 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 PSMD4P55036 377 aaKnown RBP4.89□□□□□ -1.63
LIMA1-212ENST00000552491 MFGE8Q08431 387 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-212ENST00000552491 DHRS2Q13268 280 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 NFATC4Q14934 902 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 ATXN7L3Q14CW9 347 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-212ENST00000552491 MEP1BQ16820 701 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 ALG11Q2TAA5 492 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 ELOA3BQ3SY89 546 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 CLVS2Q5SYC1 327 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 EEF1A1P5Q5VTE0 462 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 LIN54Q6MZP7 749 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 CORO6Q6QEF8 472 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 OR2W3Q7Z3T1 314 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 RTN4RL2Q86UN3 420 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 LINC00518Q8N0U6 118 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 BEST3Q8N1M1 668 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 CLRN3Q8NCR9 226 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 STEAP2Q8NFT2 490 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 ELOA3Q8NG57 546 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 OR4S1Q8NGB4 309 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 OR5T2Q8NGG2 359 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 OR51A2Q8NGJ7 313 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 OR1J4Q8NGS1 313 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 FAM174AQ8TBP5 190 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 CCDC107Q8WV48 283 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 LIPHQ8WWY8 451 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 MRGPRFQ96AM1 343 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 SEC22AQ96IW7 307 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 CCNL2Q96S94 520 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-212ENST00000552491 SLC6A7Q99884 636 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 KXD1Q9BQD3 176 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 ADAT1Q9BUB4 502 aaKnown RBP4.89□□□□□ -1.63
LIMA1-212ENST00000552491 G6PC3Q9BUM1 346 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 ZNF416Q9BWM5 594 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 TMEM185BQ9H7F4 350 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 SFXN1Q9H9B4 322 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 ELOVL3Q9HB03 270 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 SLC17A5Q9NRA2 495 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 PCDHB16Q9NRJ7 776 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 HRASLS2Q9NWW9 162 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 UPB1Q9UBR1 384 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 CGGBP1Q9UFW8 167 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-212ENST00000552491 CYB5R1Q9UHQ9 305 aa4.89□□□□□ -1.63
LIMA1-212ENST00000552491 MRPS18BQ9Y676 258 aaKnown RBP4.89□□□□□ -1.63
LIMA1-212ENST00000552491 ARID1AO14497 2285 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 ARPC4-TTLL3A0A0A6YYG9 625 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 LOC100289279A0A1B0GTE1 492 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 A0A1W2PQF6 199 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 SRPX2O60687 465 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-212ENST00000552491 SLC25A12O75746 678 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 RAB3DO95716 219 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 TXNDC12O95881 172 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 PLGP00747 810 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-212ENST00000552491 CD8AP01732 235 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 APODP05090 189 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 CSN2P05814 226 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 HOXC4P09017 264 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-212ENST00000552491 ADCYAP1P18509 176 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 AKR1C2P52895 323 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 ATP1B3P54709 279 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 MC2RQ01718 297 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 AKR1C1Q04828 323 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 EGR3Q06889 387 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 FGL1Q08830 312 aa4.88□□□□□ -1.63
LIMA1-212ENST00000552491 RASGEF1BQ0VAM2 473 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms