RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 SH3GL3Q99963 347 aa16.35■□□□□ 0.21
VPS33A-205ENST00000541169 GABARAPL3Q9BY60 117 aa16.35■□□□□ 0.21
VPS33A-205ENST00000541169 FN3KQ9H479 309 aa16.35■□□□□ 0.21
VPS33A-205ENST00000541169 DCLRE1BQ9H816 532 aa16.35■□□□□ 0.21
VPS33A-205ENST00000541169 SRA1Q9HD15 236 aaKnown RBP16.35■□□□□ 0.21
VPS33A-205ENST00000541169 ZNF224Q9NZL3 707 aa16.35■□□□□ 0.21
VPS33A-205ENST00000541169 COA3Q9Y2R0 106 aaPredicted RBP16.35■□□□□ 0.21
VPS33A-205ENST00000541169 SPEF1Q9Y4P9 236 aa16.35■□□□□ 0.21
VPS33A-205ENST00000541169 CRYBG3Q68DQ2 2970 aa16.34■□□□□ 0.21
VPS33A-205ENST00000541169 IGLV1-36A0A0B4J1U3 117 aa16.34■□□□□ 0.21
VPS33A-205ENST00000541169 IGHV1-18A0A0C4DH31 117 aa16.34■□□□□ 0.21
VPS33A-205ENST00000541169 VSTM5A8MXK1 200 aa16.34■□□□□ 0.21
VPS33A-205ENST00000541169 IGFBP1P08833 259 aaPredicted RBP16.34■□□□□ 0.21
VPS33A-205ENST00000541169 ZNF14P17017 642 aaPredicted RBP16.34■□□□□ 0.21
VPS33A-205ENST00000541169 SCRN3Q0VDG4 424 aa16.34■□□□□ 0.21
VPS33A-205ENST00000541169 NPRL3Q12980 569 aa16.34■□□□□ 0.21
VPS33A-205ENST00000541169 UNQ6126/PRO20091Q6UXV3 157 aa16.34■□□□□ 0.21
VPS33A-205ENST00000541169 LRRC18Q8N456 261 aa16.34■□□□□ 0.21
VPS33A-205ENST00000541169 PROKR2Q8NFJ6 384 aa16.34■□□□□ 0.21
VPS33A-205ENST00000541169 IPCEF1Q8WWN9 437 aaPredicted RBP16.34■□□□□ 0.21
VPS33A-205ENST00000541169 C1QTNF6Q9BXI9 259 aa16.34■□□□□ 0.21
VPS33A-205ENST00000541169 NMNAT2Q9BZQ4 307 aa16.34■□□□□ 0.21
VPS33A-205ENST00000541169 RERGLQ9H628 205 aa16.34■□□□□ 0.21
VPS33A-205ENST00000541169 PLEKHF2Q9H8W4 249 aa16.34■□□□□ 0.21
VPS33A-205ENST00000541169 FAIMQ9NVQ4 179 aa16.34■□□□□ 0.21
VPS33A-205ENST00000541169 PRR23D1E9PI22 279 aaPredicted RBP16.33■□□□□ 0.2
VPS33A-205ENST00000541169 SURF4O15260 269 aa16.33■□□□□ 0.2
VPS33A-205ENST00000541169 MMP7P09237 267 aaPredicted RBP16.33■□□□□ 0.2
VPS33A-205ENST00000541169 CECR9P0C854 216 aa16.33■□□□□ 0.2
VPS33A-205ENST00000541169 PRR23D2P0DMB1 279 aaPredicted RBP16.33■□□□□ 0.2
VPS33A-205ENST00000541169 IDH3GP51553 393 aaPredicted RBP16.33■□□□□ 0.2
VPS33A-205ENST00000541169 NAAAQ02083 359 aa16.33■□□□□ 0.2
VPS33A-205ENST00000541169 PIGFQ07326 219 aa16.33■□□□□ 0.2
VPS33A-205ENST00000541169 CRMP1Q14194 572 aa16.33■□□□□ 0.2
VPS33A-205ENST00000541169 ETFDHQ16134 617 aa16.33■□□□□ 0.2
VPS33A-205ENST00000541169 SLC22A25Q6T423 547 aa16.33■□□□□ 0.2
VPS33A-205ENST00000541169 ZBTB49Q6ZSB9 765 aa16.33■□□□□ 0.2
VPS33A-205ENST00000541169 C1orf174Q8IYL3 243 aa16.33■□□□□ 0.2
VPS33A-205ENST00000541169 CBR4Q8N4T8 237 aa16.33■□□□□ 0.2
VPS33A-205ENST00000541169 OR10H5Q8NGA6 315 aa16.33■□□□□ 0.2
VPS33A-205ENST00000541169 ZNF75AQ96N20 296 aa16.33■□□□□ 0.2
VPS33A-205ENST00000541169 RDH12Q96NR8 316 aa16.33■□□□□ 0.2
VPS33A-205ENST00000541169 ATPIF1Q9UII2 106 aa16.33■□□□□ 0.2
VPS33A-205ENST00000541169 TMEFF2Q9UIK5 374 aaPredicted RBP16.33■□□□□ 0.2
VPS33A-205ENST00000541169 POU2F3Q9UKI9 436 aa16.33■□□□□ 0.2
VPS33A-205ENST00000541169 CENPEQ02224 2701 aa16.33■□□□□ 0.2
VPS33A-205ENST00000541169 CELSR2Q9HCU4 2923 aa16.33■□□□□ 0.2
VPS33A-205ENST00000541169 ZAR1LA6NP61 321 aa16.32■□□□□ 0.2
VPS33A-205ENST00000541169 EI24O14681 340 aa16.32■□□□□ 0.2
VPS33A-205ENST00000541169 HS3ST1O14792 307 aa16.32■□□□□ 0.2
VPS33A-205ENST00000541169 PRODHO43272 600 aa16.32■□□□□ 0.2
VPS33A-205ENST00000541169 HLA-DQA2P01906 255 aa16.32■□□□□ 0.2
VPS33A-205ENST00000541169 COX5BP10606 129 aa16.32■□□□□ 0.2
VPS33A-205ENST00000541169 FMO3P31513 532 aa16.32■□□□□ 0.2
VPS33A-205ENST00000541169 TUBA1BP68363 451 aa16.32■□□□□ 0.2
VPS33A-205ENST00000541169 TUBA4AP68366 448 aa16.32■□□□□ 0.2
VPS33A-205ENST00000541169 RCN1Q15293 331 aa16.32■□□□□ 0.2
VPS33A-205ENST00000541169 SNAPC1Q16533 368 aa16.32■□□□□ 0.2
VPS33A-205ENST00000541169 TBC1D28Q2M2D7 210 aa16.32■□□□□ 0.2
VPS33A-205ENST00000541169 ZNF672Q499Z4 452 aaPredicted RBP16.32■□□□□ 0.2
VPS33A-205ENST00000541169 SLX4IPQ5VYV7 408 aa16.32■□□□□ 0.2
VPS33A-205ENST00000541169 ACSM5Q6NUN0 579 aa16.32■□□□□ 0.2
VPS33A-205ENST00000541169 TUBA1AQ71U36 451 aa16.32■□□□□ 0.2
VPS33A-205ENST00000541169 ZNF611Q8N823 705 aa16.32■□□□□ 0.2
VPS33A-205ENST00000541169 GJC3Q8NFK1 279 aa16.32■□□□□ 0.2
VPS33A-205ENST00000541169 SLC26A10Q8NG04 563 aa16.32■□□□□ 0.2
VPS33A-205ENST00000541169 NINJ1Q92982 152 aa16.32■□□□□ 0.2
VPS33A-205ENST00000541169 FBXW5Q969U6 566 aa16.32■□□□□ 0.2
VPS33A-205ENST00000541169 LURAP1Q96LR2 239 aa16.32■□□□□ 0.2
VPS33A-205ENST00000541169 HS3ST6Q96QI5 342 aa16.32■□□□□ 0.2
VPS33A-205ENST00000541169 ZNF416Q9BWM5 594 aa16.32■□□□□ 0.2
VPS33A-205ENST00000541169 CDADC1Q9BWV3 514 aa16.32■□□□□ 0.2
VPS33A-205ENST00000541169 FBXO9Q9UK97 447 aaPredicted RBP16.32■□□□□ 0.2
VPS33A-205ENST00000541169 POLR1DQ9Y2S0 133 aa16.32■□□□□ 0.2
VPS33A-205ENST00000541169 ZNF503-AS2A6NEH8 195 aa16.31■□□□□ 0.2
VPS33A-205ENST00000541169 DCTN6O00399 190 aa16.31■□□□□ 0.2
VPS33A-205ENST00000541169 SNAP29O95721 258 aa16.31■□□□□ 0.2
VPS33A-205ENST00000541169 GAAP10253 952 aa16.31■□□□□ 0.2
VPS33A-205ENST00000541169 ANPEPP15144 967 aa16.31■□□□□ 0.2
VPS33A-205ENST00000541169 ZNF823P16415 610 aa16.31■□□□□ 0.2
VPS33A-205ENST00000541169 ELF3P78545 371 aaPredicted RBP16.31■□□□□ 0.2
VPS33A-205ENST00000541169 ENDOGQ14249 297 aaKnown RBP16.31■□□□□ 0.2
VPS33A-205ENST00000541169 SLC35D3Q5M8T2 416 aa16.31■□□□□ 0.2
VPS33A-205ENST00000541169 ZNF544Q6NX49 715 aa16.31■□□□□ 0.2
VPS33A-205ENST00000541169 ARL9Q6T311 187 aa16.31■□□□□ 0.2
VPS33A-205ENST00000541169 IQCF1Q8N6M8 205 aa16.31■□□□□ 0.2
VPS33A-205ENST00000541169 PACRGLQ8N7B6 248 aa16.31■□□□□ 0.2
VPS33A-205ENST00000541169 CYB561A3Q8NBI2 242 aa16.31■□□□□ 0.2
VPS33A-205ENST00000541169 NUP37Q8NFH4 326 aa16.31■□□□□ 0.2
VPS33A-205ENST00000541169 FBXO17Q96EF6 278 aa16.31■□□□□ 0.2
VPS33A-205ENST00000541169 TSSK2Q96PF2 358 aa16.31■□□□□ 0.2
VPS33A-205ENST00000541169 OR2H1Q9GZK4 316 aa16.31■□□□□ 0.2
VPS33A-205ENST00000541169 NDRG4Q9ULP0 352 aaKnown RBP16.31■□□□□ 0.2
VPS33A-205ENST00000541169 SHISA9B4DS77 424 aa16.3■□□□□ 0.2
VPS33A-205ENST00000541169 ANKRD65E5RJM6 399 aa16.3■□□□□ 0.2
VPS33A-205ENST00000541169 H0YHG0 523 aa16.3■□□□□ 0.2
VPS33A-205ENST00000541169 MITFO75030 526 aaPredicted RBP16.3■□□□□ 0.2
VPS33A-205ENST00000541169 ZNF32P17041 273 aa16.3■□□□□ 0.2
VPS33A-205ENST00000541169 SPI1P17947 270 aa16.3■□□□□ 0.2
VPS33A-205ENST00000541169 APLNRP35414 380 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms