RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 CDH4P55283 916 aa2.2□□□□□ -2.06
CD44-233ENST00000531141 ACTA2P62736 377 aa2.2□□□□□ -2.06
CD44-233ENST00000531141 ACTC1P68032 377 aa2.2□□□□□ -2.06
CD44-233ENST00000531141 AQP6Q13520 282 aa2.2□□□□□ -2.06
CD44-233ENST00000531141 SHHQ15465 462 aa2.2□□□□□ -2.06
CD44-233ENST00000531141 UQCC3Q6UW78 93 aa2.2□□□□□ -2.06
CD44-233ENST00000531141 SLC25A48Q6ZT89 311 aaKnown RBP2.2□□□□□ -2.06
CD44-233ENST00000531141 ABHD12BQ7Z5M8 362 aaPredicted RBP2.2□□□□□ -2.06
CD44-233ENST00000531141 TMEM135Q86UB9 458 aa2.2□□□□□ -2.06
CD44-233ENST00000531141 PUSL1Q8N0Z8 303 aaKnown RBP2.2□□□□□ -2.06
CD44-233ENST00000531141 MREGQ8N565 214 aa2.2□□□□□ -2.06
CD44-233ENST00000531141 FAM86B1Q8N7N1 296 aa2.2□□□□□ -2.06
CD44-233ENST00000531141 BHLHE23Q8NDY6 225 aa2.2□□□□□ -2.06
CD44-233ENST00000531141 OR10G4Q8NGN3 311 aa2.2□□□□□ -2.06
CD44-233ENST00000531141 FAM110BQ8TC76 370 aa2.2□□□□□ -2.06
CD44-233ENST00000531141 STMN2Q93045 179 aa2.2□□□□□ -2.06
CD44-233ENST00000531141 NPY6RQ99463 290 aa2.2□□□□□ -2.06
CD44-233ENST00000531141 SH3GL1Q99961 368 aa2.2□□□□□ -2.06
CD44-233ENST00000531141 GABARAPL3Q9BY60 117 aa2.2□□□□□ -2.06
CD44-233ENST00000531141 RPP21Q9H633 154 aaKnown RBP2.2□□□□□ -2.06
CD44-233ENST00000531141 SLC40A1Q9NP59 571 aa2.2□□□□□ -2.06
CD44-233ENST00000531141 DOCK9Q9BZ29 2069 aa2.2□□□□□ -2.06
CD44-233ENST00000531141 KANK1Q14678 1352 aa2.2□□□□□ -2.06
CD44-233ENST00000531141 PLEKHG2Q9H7P9 1386 aa2.2□□□□□ -2.06
CD44-233ENST00000531141 CACNA1GO43497 2377 aa2.2□□□□□ -2.06
CD44-233ENST00000531141 MROH7-TTC4A0A0A0MT08 1334 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 CCDC144AA2RUR9 1427 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 TECPR2O15040 1411 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 TRAV39A0A0B4J263 110 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 IGKV1D-13A0A0B4J2D9 117 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 A0A1W2PPE3 182 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 A0A1W2PQ67 120 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 OR52A4PA6NMU1 304 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 TCP11X1B4DZS4 312 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 CCL21O00585 134 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 CXCL11O14625 94 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 B4GALT5O43286 388 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 ERLIN2O94905 339 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 CTDNEP1O95476 244 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 IL1BP01584 269 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 CISD3P0C7P0 127 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 IGKV1-13P0DP09 117 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 ATP1B2P14415 290 aaPredicted RBP2.19□□□□□ -2.06
CD44-233ENST00000531141 PMELP40967 661 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 AIF1P55008 147 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 FBXW4P57775 412 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 ACTR1AP61163 376 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 ZNF92Q03936 586 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 PRPSAP1Q14558 356 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 ANKDD1AQ495B1 522 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 C5orf47Q569G3 176 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 C6orf226Q5I0X4 101 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 CASC1Q6TDU7 716 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 FAM92BQ6ZTR7 304 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 EGFL6Q8IUX8 553 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 ZNF695Q8IW36 515 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 ZNF679Q8IYX0 411 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 OR2G2Q8NGZ5 317 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 TCEANC2Q96MN5 208 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 WFIKKN1Q96NZ8 548 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 OR2A5Q96R48 311 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 FMO2Q99518 471 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 SH3GL3Q99963 347 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 LRRC40Q9H9A6 602 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 FN3KRPQ9HA64 309 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 NT5MQ9NPB1 228 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 INPP5EQ9NRR6 644 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 ZNF639Q9UID6 485 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 YTHDF2Q9Y5A9 579 aaKnown RBP2.19□□□□□ -2.06
CD44-233ENST00000531141 NPTNQ9Y639 398 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 SBNO1A3KN83 1393 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 CEP152O94986 1710 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 NRAPQ86VF7 1730 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 VIRMAQ69YN4 1812 aaKnown RBP2.19□□□□□ -2.06
CD44-233ENST00000531141 SBF2Q86WG5 1849 aa2.19□□□□□ -2.06
CD44-233ENST00000531141 TRIOBPQ9H2D6 2365 aa2.18□□□□□ -2.06
CD44-233ENST00000531141 TET2Q6N021 2002 aaPredicted RBP2.18□□□□□ -2.06
CD44-233ENST00000531141 MKI67P46013 3256 aaKnown RBP2.18□□□□□ -2.06
CD44-233ENST00000531141 COL14A1Q05707 1796 aaKnown RBP2.18□□□□□ -2.06
CD44-233ENST00000531141 HFM1A2PYH4 1435 aa2.18□□□□□ -2.06
CD44-233ENST00000531141 TNS3Q68CZ2 1445 aa2.18□□□□□ -2.06
CD44-233ENST00000531141 SLIT3O75094 1523 aa2.18□□□□□ -2.06
CD44-233ENST00000531141 COL24A1Q17RW2 1714 aa2.18□□□□□ -2.06
CD44-233ENST00000531141 IGHV5-51A0A0C4DH38 117 aa2.18□□□□□ -2.06
CD44-233ENST00000531141 SPRR5A0A1B0GTR4 108 aa2.18□□□□□ -2.06
CD44-233ENST00000531141 A0A1W2PPV9 198 aa2.18□□□□□ -2.06
CD44-233ENST00000531141 BTBD17A6NE02 478 aa2.18□□□□□ -2.06
CD44-233ENST00000531141 ZNF726A6NNF4 738 aa2.18□□□□□ -2.06
CD44-233ENST00000531141 DYNC1I1O14576 645 aa2.18□□□□□ -2.06
CD44-233ENST00000531141 BET1O15155 118 aa2.18□□□□□ -2.06
CD44-233ENST00000531141 TMEM50AO95807 157 aa2.18□□□□□ -2.06
CD44-233ENST00000531141 MRPL3P09001 348 aaKnown RBP2.18□□□□□ -2.06
CD44-233ENST00000531141 AK4P27144 223 aaPredicted RBP2.18□□□□□ -2.06
CD44-233ENST00000531141 CYB561P49447 251 aa2.18□□□□□ -2.06
CD44-233ENST00000531141 ARFIP1P53367 373 aa2.18□□□□□ -2.06
CD44-233ENST00000531141 RPS21P63220 83 aaKnown RBP2.18□□□□□ -2.06
CD44-233ENST00000531141 ABCA11PQ4W5N1 156 aa2.18□□□□□ -2.06
CD44-233ENST00000531141 CTSL3PQ5NE16 218 aa2.18□□□□□ -2.06
CD44-233ENST00000531141 LY6G6FQ5SQ64 297 aa2.18□□□□□ -2.06
CD44-233ENST00000531141 KDM7AQ6ZMT4 941 aa2.18□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms