RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 RNF133Q8WVZ7 376 aa2.7□□□□□ -1.98
CD44-229ENST00000528672 ST8SIA1Q92185 356 aa2.7□□□□□ -1.98
CD44-229ENST00000528672 SMARCD2Q92925 531 aa2.7□□□□□ -1.98
CD44-229ENST00000528672 ZNF251Q9BRH9 671 aa2.7□□□□□ -1.98
CD44-229ENST00000528672 UTP23Q9BRU9 249 aaKnown RBP2.7□□□□□ -1.98
CD44-229ENST00000528672 TMED9Q9BVK6 235 aa2.7□□□□□ -1.98
CD44-229ENST00000528672 TSSK1BQ9BXA7 367 aa2.7□□□□□ -1.98
CD44-229ENST00000528672 DUSP16Q9BY84 665 aa2.7□□□□□ -1.98
CD44-229ENST00000528672 YTHDF1Q9BYJ9 559 aaKnown RBP2.7□□□□□ -1.98
CD44-229ENST00000528672 PARLQ9H300 379 aa2.7□□□□□ -1.98
CD44-229ENST00000528672 ZNF696Q9H7X3 374 aa2.7□□□□□ -1.98
CD44-229ENST00000528672 FGF22Q9HCT0 170 aa2.7□□□□□ -1.98
CD44-229ENST00000528672 ABCB9Q9NP78 766 aa2.7□□□□□ -1.98
CD44-229ENST00000528672 MYOZ2Q9NPC6 264 aa2.7□□□□□ -1.98
CD44-229ENST00000528672 ZC4H2Q9NQZ6 224 aa2.7□□□□□ -1.98
CD44-229ENST00000528672 PXMP2Q9NR77 195 aa2.7□□□□□ -1.98
CD44-229ENST00000528672 SLC17A5Q9NRA2 495 aa2.7□□□□□ -1.98
CD44-229ENST00000528672 RGS18Q9NS28 235 aa2.7□□□□□ -1.98
CD44-229ENST00000528672 SDHAF2Q9NX18 166 aa2.7□□□□□ -1.98
CD44-229ENST00000528672 SLC2A8Q9NY64 477 aa2.7□□□□□ -1.98
CD44-229ENST00000528672 PTTG3PQ9NZH4 202 aa2.7□□□□□ -1.98
CD44-229ENST00000528672 PHF11Q9UIL8 331 aa2.7□□□□□ -1.98
CD44-229ENST00000528672 ZNF221Q9UK13 617 aa2.7□□□□□ -1.98
CD44-229ENST00000528672 GUCA1BQ9UMX6 200 aa2.7□□□□□ -1.98
CD44-229ENST00000528672 PSG11Q9UQ72 335 aa2.7□□□□□ -1.98
CD44-229ENST00000528672 MEMO1Q9Y316 297 aa2.7□□□□□ -1.98
CD44-229ENST00000528672 TSSC4Q9Y5U2 329 aaPredicted RBP2.7□□□□□ -1.98
CD44-229ENST00000528672 ALG6Q9Y672 507 aa2.7□□□□□ -1.98
CD44-229ENST00000528672 NID2Q14112 1375 aa2.7□□□□□ -1.98
CD44-229ENST00000528672 MRC2Q9UBG0 1479 aa2.7□□□□□ -1.98
CD44-229ENST00000528672 KDM6BO15054 1643 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 IGHV4-30-2A0A087WSY4 118 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 TEX48A0A1B0GUV7 120 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 LRP5LA4QPB2 252 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 ZNF99A8MXY4 864 aaPredicted RBP2.69□□□□□ -1.98
CD44-229ENST00000528672 E9PAM4 449 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 E9PQ18 207 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 K7EQG2 157 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 NBR2O15453 112 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 EFNA2O43921 213 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 PRKYO43930 277 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 OR10H3O60404 316 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 RAMP1O60894 148 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 ZMPSTE24O75844 475 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 OR7A10O76100 309 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 VAPBO95292 243 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 TSPAN12O95859 305 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 FADS2O95864 444 aaKnown RBP2.69□□□□□ -1.98
CD44-229ENST00000528672 ACTL6AO96019 429 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 RPN2P04844 631 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 KLK3P07288 261 aaPredicted RBP2.69□□□□□ -1.98
CD44-229ENST00000528672 SP1P08047 785 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 SNRPCP09234 159 aaKnown RBP2.69□□□□□ -1.98
CD44-229ENST00000528672 HSPD1P10809 573 aaKnown RBP2.69□□□□□ -1.98
CD44-229ENST00000528672 COX4I1P13073 169 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 SDC1P18827 310 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 RAB3AP20336 220 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 DCKP27707 260 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 SPRP35270 261 aaPredicted RBP2.69□□□□□ -1.98
CD44-229ENST00000528672 RPL4P36578 427 aaKnown RBP2.69□□□□□ -1.98
CD44-229ENST00000528672 COILP38432 576 aaPredicted RBP2.69□□□□□ -1.98
CD44-229ENST00000528672 HSPA9P38646 679 aaKnown RBP2.69□□□□□ -1.98
CD44-229ENST00000528672 MAGEA3P43357 314 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 P2RY1P47900 373 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 EIF2B2P49770 351 aaKnown RBP2.69□□□□□ -1.98
CD44-229ENST00000528672 PRKXP51817 358 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 FGF8P55075 233 aaPredicted RBP2.69□□□□□ -1.98
CD44-229ENST00000528672 NDUFV3P56181 108 aaKnown RBP2.69□□□□□ -1.98
CD44-229ENST00000528672 ESRRGP62508 458 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 ERVK-25P63136 954 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 KCNJ2P63252 427 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 MRPS22P82650 360 aaKnown RBP2.69□□□□□ -1.98
CD44-229ENST00000528672 MRPS11P82912 194 aaKnown RBP2.69□□□□□ -1.98
CD44-229ENST00000528672 IFITM2Q01629 132 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 SEMG2Q02383 582 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 BNIP2Q12982 314 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 PDIA2Q13087 525 aaKnown RBP2.69□□□□□ -1.98
CD44-229ENST00000528672 IL18R1Q13478 541 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 POU6F1Q14863 301 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 GPNMBQ14956 572 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 TAF1AQ15573 450 aaPredicted RBP2.69□□□□□ -1.98
CD44-229ENST00000528672 SLC1A5Q15758 541 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 DUSP7Q16829 419 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 MICBQ29980 383 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 COX19Q49B96 90 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 TMEM52BQ4KMG9 183 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 AKIRIN2Q53H80 203 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 SFT2D3Q587I9 215 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 LINC00242Q5T6M2 205 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 LGSNQ5TDP6 509 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 REP15Q6BDI9 236 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 OR52E8Q6IFG1 317 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 H3F3CQ6NXT2 135 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 FAM199XQ6PEV8 388 aaPredicted RBP2.69□□□□□ -1.98
CD44-229ENST00000528672 CYHR1Q6ZMK1 362 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 STAC2Q6ZMT1 411 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 FAM92BQ6ZTR7 304 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 PRSS48Q7RTY5 328 aa2.69□□□□□ -1.98
CD44-229ENST00000528672 TIPARPQ7Z3E1 657 aaKnown RBP2.69□□□□□ -1.98
CD44-229ENST00000528672 LYG2Q86SG7 212 aa2.69□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms