RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	TTC23L	Q6PF05	361 aa		2.96	□□□□□ -1.94
CD44-223	ENST00000526553	ZNF836	Q6ZNA1	936 aa		2.96	□□□□□ -1.94
CD44-223	ENST00000526553		Q6ZSR3	168 aa		2.96	□□□□□ -1.94
CD44-223	ENST00000526553	MMAA	Q8IVH4	418 aa	Known RBP	2.96	□□□□□ -1.94
CD44-223	ENST00000526553	EID2	Q8N6I1	236 aa		2.96	□□□□□ -1.94
CD44-223	ENST00000526553	PQLC3	Q8N755	202 aa		2.96	□□□□□ -1.94
CD44-223	ENST00000526553	OR52K1	Q8NGK4	314 aa		2.96	□□□□□ -1.94
CD44-223	ENST00000526553	OR1N2	Q8NGR9	330 aa		2.96	□□□□□ -1.94
CD44-223	ENST00000526553	OR9G1	Q8NH87	305 aa		2.96	□□□□□ -1.94
CD44-223	ENST00000526553	CXorf40A	Q8TE69	158 aa		2.96	□□□□□ -1.94
CD44-223	ENST00000526553	GLYATL2	Q8WU03	294 aa		2.96	□□□□□ -1.94
CD44-223	ENST00000526553	SH3GL3	Q99963	347 aa		2.96	□□□□□ -1.94
CD44-223	ENST00000526553	OR51M1	Q9H341	326 aa		2.96	□□□□□ -1.94
CD44-223	ENST00000526553	CLSTN2	Q9H4D0	955 aa		2.96	□□□□□ -1.94
CD44-223	ENST00000526553	ELOVL6	Q9H5J4	265 aa		2.96	□□□□□ -1.94
CD44-223	ENST00000526553	SIAE	Q9HAT2	523 aa		2.96	□□□□□ -1.94
CD44-223	ENST00000526553	PEF1	Q9UBV8	284 aa	Known RBP	2.96	□□□□□ -1.94
CD44-223	ENST00000526553	SHPK	Q9UHJ6	478 aa		2.96	□□□□□ -1.94
CD44-223	ENST00000526553	TBC1D24	Q9ULP9	559 aa		2.96	□□□□□ -1.94
CD44-223	ENST00000526553	NEU3	Q9UQ49	428 aa		2.96	□□□□□ -1.94
CD44-223	ENST00000526553	NEUROG3	Q9Y4Z2	214 aa		2.96	□□□□□ -1.94
CD44-223	ENST00000526553	ABCC3	O15438	1527 aa		2.96	□□□□□ -1.94
CD44-223	ENST00000526553	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	2.96	□□□□□ -1.94
CD44-223	ENST00000526553	NCOA2	Q15596	1464 aa		2.96	□□□□□ -1.94
CD44-223	ENST00000526553	CCDC141	Q6ZP82	1450 aa		2.96	□□□□□ -1.94
CD44-223	ENST00000526553	FYCO1	Q9BQS8	1478 aa		2.96	□□□□□ -1.94
CD44-223	ENST00000526553	RGS12	O14924	1447 aa		2.95	□□□□□ -1.94
CD44-223	ENST00000526553	MAP3K1	Q13233	1512 aa		2.95	□□□□□ -1.94
CD44-223	ENST00000526553		A0A0J9YXY3	114 aa		2.95	□□□□□ -1.94
CD44-223	ENST00000526553	KBTBD11-OT1	A0A1B0GTJ5	212 aa		2.95	□□□□□ -1.94
CD44-223	ENST00000526553	RBMY1B	A6NDE4	496 aa	Known RBP	2.95	□□□□□ -1.94
CD44-223	ENST00000526553	RBMY1E	A6NEQ0	496 aa	Known RBP	2.95	□□□□□ -1.94
CD44-223	ENST00000526553	SLC31A2	O15432	143 aa		2.95	□□□□□ -1.94
CD44-223	ENST00000526553	CA11	O75493	328 aa		2.95	□□□□□ -1.94
CD44-223	ENST00000526553	TSPAN13	O95857	204 aa		2.95	□□□□□ -1.94
CD44-223	ENST00000526553	FGG	P02679	453 aa		2.95	□□□□□ -1.94
CD44-223	ENST00000526553	PLEK	P08567	350 aa	Predicted RBP	2.95	□□□□□ -1.94
CD44-223	ENST00000526553	RBMY1D	P0C7P1	496 aa	Known RBP	2.95	□□□□□ -1.94
CD44-223	ENST00000526553	POLR2M	P0CAP2	368 aa		2.95	□□□□□ -1.94
CD44-223	ENST00000526553	RBMY1A1	P0DJD3	496 aa	Known RBP	2.95	□□□□□ -1.94
CD44-223	ENST00000526553	ICAM2	P13598	275 aa		2.95	□□□□□ -1.94
CD44-223	ENST00000526553	GSTM3	P21266	225 aa		2.95	□□□□□ -1.94
CD44-223	ENST00000526553	CSNK1E	P49674	416 aa	Known RBP	2.95	□□□□□ -1.94
CD44-223	ENST00000526553	SUB1	P53999	127 aa	Known RBP eCLIP	2.95	□□□□□ -1.94
CD44-223	ENST00000526553	CLDN8	P56748	225 aa		2.95	□□□□□ -1.94
CD44-223	ENST00000526553	PDIA2	Q13087	525 aa	Known RBP	2.95	□□□□□ -1.94
CD44-223	ENST00000526553	MRPL23	Q16540	153 aa	Known RBP	2.95	□□□□□ -1.94
CD44-223	ENST00000526553	NRF1	Q16656	503 aa		2.95	□□□□□ -1.94
CD44-223	ENST00000526553	CAVIN4	Q5BKX8	364 aa		2.95	□□□□□ -1.94
CD44-223	ENST00000526553	PIP5KL1	Q5T9C9	394 aa		2.95	□□□□□ -1.94
CD44-223	ENST00000526553	STUM	Q69YW2	141 aa		2.95	□□□□□ -1.94
CD44-223	ENST00000526553	ZNF620	Q6ZNG0	422 aa		2.95	□□□□□ -1.94
CD44-223	ENST00000526553	H2AFV	Q71UI9	128 aa		2.95	□□□□□ -1.94
CD44-223	ENST00000526553	PUSL1	Q8N0Z8	303 aa	Known RBP	2.95	□□□□□ -1.94
CD44-223	ENST00000526553	ZNF740	Q8NDX6	193 aa		2.95	□□□□□ -1.94
CD44-223	ENST00000526553	OR10G9	Q8NGN4	311 aa		2.95	□□□□□ -1.94
CD44-223	ENST00000526553	MARCH1	Q8TCQ1	289 aa		2.95	□□□□□ -1.94
CD44-223	ENST00000526553	FCRL1	Q96LA6	429 aa		2.95	□□□□□ -1.94
CD44-223	ENST00000526553	XPO6	Q96QU8	1125 aa	Known RBP	2.95	□□□□□ -1.94
CD44-223	ENST00000526553	SLC29A1	Q99808	456 aa		2.95	□□□□□ -1.94
CD44-223	ENST00000526553	SLC25A39	Q9BZJ4	359 aa	Predicted RBP	2.95	□□□□□ -1.94
CD44-223	ENST00000526553	FGF20	Q9NP95	211 aa	Predicted RBP	2.95	□□□□□ -1.94
CD44-223	ENST00000526553	XCL2	Q9UBD3	114 aa		2.95	□□□□□ -1.94
CD44-223	ENST00000526553	CLN8	Q9UBY8	286 aa		2.95	□□□□□ -1.94
CD44-223	ENST00000526553	LSM7	Q9UK45	103 aa	Known RBP	2.95	□□□□□ -1.94
CD44-223	ENST00000526553	PACSIN2	Q9UNF0	486 aa	Predicted RBP	2.95	□□□□□ -1.94
CD44-223	ENST00000526553	SLC25A15	Q9Y619	301 aa		2.95	□□□□□ -1.94
CD44-223	ENST00000526553	PLEKHG1	Q9ULL1	1385 aa		2.95	□□□□□ -1.94
CD44-223	ENST00000526553	CAMSAP2	Q08AD1	1489 aa		2.95	□□□□□ -1.94
CD44-223	ENST00000526553	SLIT1	O75093	1534 aa		2.94	□□□□□ -1.94
CD44-223	ENST00000526553	PRDM15	P57071	1507 aa	Predicted RBP	2.94	□□□□□ -1.94
CD44-223	ENST00000526553	EFCAB6	Q5THR3	1501 aa		2.94	□□□□□ -1.94
CD44-223	ENST00000526553	BRWD3	Q6RI45	1802 aa		2.94	□□□□□ -1.94
CD44-223	ENST00000526553	KCNE1B	A0A087WTH5	132 aa		2.94	□□□□□ -1.94
CD44-223	ENST00000526553	TRDMT1	O14717	391 aa	Known RBP	2.94	□□□□□ -1.94
CD44-223	ENST00000526553	PPP1R2P9	O14990	202 aa		2.94	□□□□□ -1.94
CD44-223	ENST00000526553	AK4	P27144	223 aa	Predicted RBP	2.94	□□□□□ -1.94
CD44-223	ENST00000526553	ZNF92	Q03936	586 aa		2.94	□□□□□ -1.94
CD44-223	ENST00000526553	ACVR1	Q04771	509 aa		2.94	□□□□□ -1.94
CD44-223	ENST00000526553	DAZ2	Q13117	558 aa	Known RBP	2.94	□□□□□ -1.94
CD44-223	ENST00000526553	DOC2A	Q14183	400 aa		2.94	□□□□□ -1.94
CD44-223	ENST00000526553	GPNMB	Q14956	572 aa		2.94	□□□□□ -1.94
CD44-223	ENST00000526553	SF3A2	Q15428	464 aa	Known RBP	2.94	□□□□□ -1.94
CD44-223	ENST00000526553	PPM1L	Q5SGD2	360 aa		2.94	□□□□□ -1.94
CD44-223	ENST00000526553	LY6G6F	Q5SQ64	297 aa		2.94	□□□□□ -1.94
CD44-223	ENST00000526553	PLCXD3	Q63HM9	321 aa		2.94	□□□□□ -1.94
CD44-223	ENST00000526553	TTC19	Q6DKK2	380 aa	Predicted RBP	2.94	□□□□□ -1.94
CD44-223	ENST00000526553	PNKD	Q8N490	385 aa		2.94	□□□□□ -1.94
CD44-223	ENST00000526553	NEIL3	Q8TAT5	605 aa		2.94	□□□□□ -1.94
CD44-223	ENST00000526553	PIK3IP1	Q96FE7	263 aa		2.94	□□□□□ -1.94
CD44-223	ENST00000526553	TMEM101	Q96IK0	257 aa		2.94	□□□□□ -1.94
CD44-223	ENST00000526553	PRRC1	Q96M27	445 aa		2.94	□□□□□ -1.94
CD44-223	ENST00000526553	RARRES2	Q99969	163 aa		2.94	□□□□□ -1.94
CD44-223	ENST00000526553	ECSIT	Q9BQ95	431 aa		2.94	□□□□□ -1.94
CD44-223	ENST00000526553	OR11A1	Q9GZK7	315 aa		2.94	□□□□□ -1.94
CD44-223	ENST00000526553	DEFB127	Q9H1M4	99 aa		2.94	□□□□□ -1.94
CD44-223	ENST00000526553	SRMS	Q9H3Y6	488 aa		2.94	□□□□□ -1.94
CD44-223	ENST00000526553	CWH43	Q9H720	699 aa		2.94	□□□□□ -1.94
CD44-223	ENST00000526553	CCNB1IP1	Q9NPC3	277 aa		2.94	□□□□□ -1.94
CD44-223	ENST00000526553	ZNF331	Q9NQX6	463 aa	Predicted RBP	2.94	□□□□□ -1.94

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