RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 EGLN3Q9H6Z9 239 aa13.8□□□□□ -0.2
LIME1-209ENST00000494776 CDH20Q9HBT6 801 aa13.8□□□□□ -0.2
LIME1-209ENST00000494776 CDH10Q9Y6N8 788 aa13.8□□□□□ -0.2
LIME1-209ENST00000494776 ARPC3O15145 178 aa13.79□□□□□ -0.2
LIME1-209ENST00000494776 IDH3BO43837 385 aa13.79□□□□□ -0.2
LIME1-209ENST00000494776 FKBP6O75344 327 aa13.79□□□□□ -0.2
LIME1-209ENST00000494776 CST2P09228 141 aa13.79□□□□□ -0.2
LIME1-209ENST00000494776 ZNF35P13682 527 aa13.79□□□□□ -0.2
LIME1-209ENST00000494776 CTLA4P16410 223 aa13.79□□□□□ -0.2
LIME1-209ENST00000494776 ZNF32P17041 273 aa13.79□□□□□ -0.2
LIME1-209ENST00000494776 GSTM3P21266 225 aa13.79□□□□□ -0.2
LIME1-209ENST00000494776 NR4A1P22736 598 aa13.79□□□□□ -0.2
LIME1-209ENST00000494776 CRABP1P29762 137 aa13.79□□□□□ -0.2
LIME1-209ENST00000494776 THBS4P35443 961 aa13.79□□□□□ -0.2
LIME1-209ENST00000494776 CDKN2AP42771 156 aaKnown RBP13.79□□□□□ -0.2
LIME1-209ENST00000494776 SNRPD2P62316 118 aaKnown RBP13.79□□□□□ -0.2
LIME1-209ENST00000494776 CBX1P83916 185 aa13.79□□□□□ -0.2
LIME1-209ENST00000494776 RAB35Q15286 201 aa13.79□□□□□ -0.2
LIME1-209ENST00000494776 PABPC1L2AQ5JQF8 200 aa13.79□□□□□ -0.2
LIME1-209ENST00000494776 C1orf146Q5VVC0 180 aa13.79□□□□□ -0.2
LIME1-209ENST00000494776 C11orf71Q6IPW1 123 aa13.79□□□□□ -0.2
LIME1-209ENST00000494776 ZNF770Q6IQ21 691 aaPredicted RBP13.79□□□□□ -0.2
LIME1-209ENST00000494776 LEG1Q6P5S2 330 aa13.79□□□□□ -0.2
LIME1-209ENST00000494776 DNM1P34Q6PK57 102 aa13.79□□□□□ -0.2
LIME1-209ENST00000494776 RASSF6Q6ZTQ3 369 aa13.79□□□□□ -0.2
LIME1-209ENST00000494776 PTCHD4Q6ZW05 846 aa13.79□□□□□ -0.2
LIME1-209ENST00000494776 ZNF584Q8IVC4 421 aa13.79□□□□□ -0.2
LIME1-209ENST00000494776 ALDH16A1Q8IZ83 802 aa13.79□□□□□ -0.2
LIME1-209ENST00000494776 OR4K13Q8NH42 304 aa13.79□□□□□ -0.2
LIME1-209ENST00000494776 Q96MF0 132 aa13.79□□□□□ -0.2
LIME1-209ENST00000494776 FOXN4Q96NZ1 517 aa13.79□□□□□ -0.2
LIME1-209ENST00000494776 ZNF442Q9H7R0 627 aa13.79□□□□□ -0.2
LIME1-209ENST00000494776 POLE4Q9NR33 117 aa13.79□□□□□ -0.2
LIME1-209ENST00000494776 TBC1D23Q9NUY8 699 aa13.79□□□□□ -0.2
LIME1-209ENST00000494776 VSX1Q9NZR4 365 aaPredicted RBP13.79□□□□□ -0.2
LIME1-209ENST00000494776 COA3Q9Y2R0 106 aaPredicted RBP13.79□□□□□ -0.2
LIME1-209ENST00000494776 CELSR1Q9NYQ6 3014 aa13.78□□□□□ -0.2
LIME1-209ENST00000494776 C12orf71A8MTZ7 269 aa13.78□□□□□ -0.2
LIME1-209ENST00000494776 B9A039 149 aa13.78□□□□□ -0.2
LIME1-209ENST00000494776 CIB2O75838 187 aa13.78□□□□□ -0.2
LIME1-209ENST00000494776 MMP7P09237 267 aaPredicted RBP13.78□□□□□ -0.2
LIME1-209ENST00000494776 CCL2P13500 99 aa13.78□□□□□ -0.2
LIME1-209ENST00000494776 HIST1H1CP16403 213 aaKnown RBP13.78□□□□□ -0.2
LIME1-209ENST00000494776 CCNOP22674 350 aa13.78□□□□□ -0.2
LIME1-209ENST00000494776 APEX1P27695 318 aaKnown RBP13.78□□□□□ -0.2
LIME1-209ENST00000494776 ARHGDIAP52565 204 aa13.78□□□□□ -0.2
LIME1-209ENST00000494776 RPS23P62266 143 aaKnown RBP13.78□□□□□ -0.2
LIME1-209ENST00000494776 ADIPOQQ15848 244 aa13.78□□□□□ -0.2
LIME1-209ENST00000494776 SLC35F1Q5T1Q4 408 aa13.78□□□□□ -0.2
LIME1-209ENST00000494776 FOXL2NBQ6ZUU3 175 aa13.78□□□□□ -0.2
LIME1-209ENST00000494776 KRTAP1-3Q8IUG1 177 aa13.78□□□□□ -0.2
LIME1-209ENST00000494776 GLB1L2Q8IW92 636 aa13.78□□□□□ -0.2
LIME1-209ENST00000494776 NMNAT3Q96T66 252 aa13.78□□□□□ -0.2
LIME1-209ENST00000494776 DGCR6LQ9BY27 220 aa13.78□□□□□ -0.2
LIME1-209ENST00000494776 NUAK2Q9H093 628 aa13.78□□□□□ -0.2
LIME1-209ENST00000494776 BARX1Q9HBU1 254 aaPredicted RBP13.78□□□□□ -0.2
LIME1-209ENST00000494776 SRA1Q9HD15 236 aaKnown RBP13.78□□□□□ -0.2
LIME1-209ENST00000494776 EMC7Q9NPA0 242 aa13.78□□□□□ -0.2
LIME1-209ENST00000494776 GDF2Q9UK05 429 aaPredicted RBP13.78□□□□□ -0.2
LIME1-209ENST00000494776 CMAHPQ9Y471 501 aa13.78□□□□□ -0.2
LIME1-209ENST00000494776 TIMM10BQ9Y5J6 103 aa13.78□□□□□ -0.2
LIME1-209ENST00000494776 HIVEP1P15822 2718 aa13.78□□□□□ -0.2
LIME1-209ENST00000494776 SOX14O95416 240 aa13.77□□□□□ -0.21
LIME1-209ENST00000494776 STOMP27105 288 aa13.77□□□□□ -0.21
LIME1-209ENST00000494776 PSG4Q00888 419 aa13.77□□□□□ -0.21
LIME1-209ENST00000494776 C2CD3Q4AC94 2353 aa13.77□□□□□ -0.21
LIME1-209ENST00000494776 MED13LQ71F56 2210 aa13.77□□□□□ -0.21
LIME1-209ENST00000494776 SDR9C7Q8NEX9 313 aa13.77□□□□□ -0.21
LIME1-209ENST00000494776 OR52E2Q8NGJ4 325 aa13.77□□□□□ -0.21
LIME1-209ENST00000494776 AKR7LQ8NHP1 331 aa13.77□□□□□ -0.21
LIME1-209ENST00000494776 FEVQ99581 238 aa13.77□□□□□ -0.21
LIME1-209ENST00000494776 TMUB1Q9BVT8 246 aa13.77□□□□□ -0.21
LIME1-209ENST00000494776 ZNF416Q9BWM5 594 aa13.77□□□□□ -0.21
LIME1-209ENST00000494776 TSSK6Q9BXA6 273 aa13.77□□□□□ -0.21
LIME1-209ENST00000494776 OR2H1Q9GZK4 316 aa13.77□□□□□ -0.21
LIME1-209ENST00000494776 PLK3Q9H4B4 646 aa13.77□□□□□ -0.21
LIME1-209ENST00000494776 ZNF556Q9HAH1 456 aa13.77□□□□□ -0.21
LIME1-209ENST00000494776 RPRD1BQ9NQG5 326 aaKnown RBP13.77□□□□□ -0.21
LIME1-209ENST00000494776 IL20Q9NYY1 176 aa13.77□□□□□ -0.21
LIME1-209ENST00000494776 PDP1Q9P0J1 537 aaPredicted RBP13.77□□□□□ -0.21
LIME1-209ENST00000494776 DNAJB9Q9UBS3 223 aa13.77□□□□□ -0.21
LIME1-209ENST00000494776 NDUFS7O75251 213 aa13.76□□□□□ -0.21
LIME1-209ENST00000494776 IGHV4-39P01824 125 aa13.76□□□□□ -0.21
LIME1-209ENST00000494776 FAM157BP0CG42 384 aa13.76□□□□□ -0.21
LIME1-209ENST00000494776 GLRXP35754 106 aa13.76□□□□□ -0.21
LIME1-209ENST00000494776 GDI2P50395 445 aaKnown RBP13.76□□□□□ -0.21
LIME1-209ENST00000494776 NUDT6P53370 316 aa13.76□□□□□ -0.21
LIME1-209ENST00000494776 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.76□□□□□ -0.21
LIME1-209ENST00000494776 COX10Q12887 443 aa13.76□□□□□ -0.21
LIME1-209ENST00000494776 ENDOGQ14249 297 aaKnown RBP13.76□□□□□ -0.21
LIME1-209ENST00000494776 EFNB3Q15768 340 aa13.76□□□□□ -0.21
LIME1-209ENST00000494776 SWI5Q1ZZU3 235 aa13.76□□□□□ -0.21
LIME1-209ENST00000494776 CLEC12BQ2HXU8 276 aa13.76□□□□□ -0.21
LIME1-209ENST00000494776 MST1LQ2TV78 715 aa13.76□□□□□ -0.21
LIME1-209ENST00000494776 UGT2A3Q6UWM9 527 aa13.76□□□□□ -0.21
LIME1-209ENST00000494776 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.76□□□□□ -0.21
LIME1-209ENST00000494776 SYT9Q86SS6 491 aa13.76□□□□□ -0.21
LIME1-209ENST00000494776 PAPD5Q8NDF8 572 aaKnown RBP13.76□□□□□ -0.21
LIME1-209ENST00000494776 CPEB3Q8NE35 698 aaKnown RBP13.76□□□□□ -0.21
LIME1-209ENST00000494776 TSSK2Q96PF2 358 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms