RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 TCRBV9S1A1TA0A576 114 aa6.53□□□□□ -1.36
USP54-211ENST00000474929 FTCDNL1E5RQL4 147 aa6.53□□□□□ -1.36
USP54-211ENST00000474929 NPIPB8E9PQR5 432 aa6.53□□□□□ -1.36
USP54-211ENST00000474929 AP3D1O14617 1153 aa6.53□□□□□ -1.36
USP54-211ENST00000474929 NPHS1O60500 1241 aa6.53□□□□□ -1.36
USP54-211ENST00000474929 FCMRO60667 390 aa6.53□□□□□ -1.36
USP54-211ENST00000474929 NPIPB7O75200 414 aa6.53□□□□□ -1.36
USP54-211ENST00000474929 STOMP27105 288 aa6.53□□□□□ -1.36
USP54-211ENST00000474929 HSD17B3P37058 310 aa6.53□□□□□ -1.36
USP54-211ENST00000474929 GDI2P50395 445 aaKnown RBP6.53□□□□□ -1.36
USP54-211ENST00000474929 HTR6P50406 440 aa6.53□□□□□ -1.36
USP54-211ENST00000474929 UBE2E1P51965 193 aa6.53□□□□□ -1.36
USP54-211ENST00000474929 EPS8Q12929 822 aa6.53□□□□□ -1.36
USP54-211ENST00000474929 TAF11Q15544 211 aa6.53□□□□□ -1.36
USP54-211ENST00000474929 CHI3L2Q15782 390 aa6.53□□□□□ -1.36
USP54-211ENST00000474929 LY6EQ16553 131 aa6.53□□□□□ -1.36
USP54-211ENST00000474929 ZNF385BQ569K4 471 aa6.53□□□□□ -1.36
USP54-211ENST00000474929 KHDC1LQ5JSQ8 128 aa6.53□□□□□ -1.36
USP54-211ENST00000474929 PHYHD1Q5SRE7 291 aa6.53□□□□□ -1.36
USP54-211ENST00000474929 FAM69AQ5T7M9 428 aa6.53□□□□□ -1.36
USP54-211ENST00000474929 C9orf66Q5T8R8 295 aa6.53□□□□□ -1.36
USP54-211ENST00000474929 ANKRD26P1Q6NSI1 321 aa6.53□□□□□ -1.36
USP54-211ENST00000474929 CRIP3Q6Q6R5 217 aa6.53□□□□□ -1.36
USP54-211ENST00000474929 NET1Q7Z628 596 aaPredicted RBP6.53□□□□□ -1.36
USP54-211ENST00000474929 SBSPONQ8IVN8 264 aa6.53□□□□□ -1.36
USP54-211ENST00000474929 MRPL41Q8IXM3 137 aaKnown RBP6.53□□□□□ -1.36
USP54-211ENST00000474929 PDZD9Q8IXQ8 264 aa6.53□□□□□ -1.36
USP54-211ENST00000474929 OR5AU1Q8NGC0 362 aa6.53□□□□□ -1.36
USP54-211ENST00000474929 OR5D16Q8NGK9 328 aa6.53□□□□□ -1.36
USP54-211ENST00000474929 OR11L1Q8NGX0 322 aa6.53□□□□□ -1.36
USP54-211ENST00000474929 ABHD4Q8TB40 342 aa6.53□□□□□ -1.36
USP54-211ENST00000474929 SLC25A36Q96CQ1 311 aa6.53□□□□□ -1.36
USP54-211ENST00000474929 SPATA9Q9BWV2 254 aa6.53□□□□□ -1.36
USP54-211ENST00000474929 DPY30Q9C005 99 aa6.53□□□□□ -1.36
USP54-211ENST00000474929 MUC13Q9H3R2 512 aa6.53□□□□□ -1.36
USP54-211ENST00000474929 TMEM38BQ9NVV0 291 aa6.53□□□□□ -1.36
USP54-211ENST00000474929 KCNE3Q9Y6H6 103 aa6.53□□□□□ -1.36
USP54-211ENST00000474929 A0A1B0GW55 424 aa6.52□□□□□ -1.37
USP54-211ENST00000474929 H3BUI4 141 aa6.52□□□□□ -1.37
USP54-211ENST00000474929 SLC28A1O00337 649 aa6.52□□□□□ -1.37
USP54-211ENST00000474929 SYNGR1O43759 233 aa6.52□□□□□ -1.37
USP54-211ENST00000474929 SUPT7LO94864 414 aa6.52□□□□□ -1.37
USP54-211ENST00000474929 CYB5R3P00387 301 aaPredicted RBP6.52□□□□□ -1.37
USP54-211ENST00000474929 PATE4P0C8F1 98 aa6.52□□□□□ -1.37
USP54-211ENST00000474929 DUX4L2P0CJ85 424 aa6.52□□□□□ -1.37
USP54-211ENST00000474929 DUX4L3P0CJ86 424 aa6.52□□□□□ -1.37
USP54-211ENST00000474929 DUX4L5P0CJ88 424 aa6.52□□□□□ -1.37
USP54-211ENST00000474929 DUX4L6P0CJ89 424 aa6.52□□□□□ -1.37
USP54-211ENST00000474929 DUX4L7P0CJ90 424 aa6.52□□□□□ -1.37
USP54-211ENST00000474929 NQO1P15559 274 aaKnown RBP6.52□□□□□ -1.37
USP54-211ENST00000474929 NCF2P19878 526 aaPredicted RBP6.52□□□□□ -1.37
USP54-211ENST00000474929 KITLGP21583 273 aa6.52□□□□□ -1.37
USP54-211ENST00000474929 AQP5P55064 265 aa6.52□□□□□ -1.37
USP54-211ENST00000474929 C2orf54Q08AI8 447 aa6.52□□□□□ -1.37
USP54-211ENST00000474929 FASTKD3Q14CZ7 662 aaKnown RBP6.52□□□□□ -1.37
USP54-211ENST00000474929 CNN3Q15417 329 aaKnown RBP6.52□□□□□ -1.37
USP54-211ENST00000474929 MAPK14Q16539 360 aa6.52□□□□□ -1.37
USP54-211ENST00000474929 SPRNQ5BIV9 151 aa6.52□□□□□ -1.37
USP54-211ENST00000474929 INTS11Q5TA45 600 aaKnown RBP6.52□□□□□ -1.37
USP54-211ENST00000474929 TYW3Q6IPR3 259 aaKnown RBP6.52□□□□□ -1.37
USP54-211ENST00000474929 DUX4L9Q6RFH8 374 aaPredicted RBP6.52□□□□□ -1.37
USP54-211ENST00000474929 CCDC121Q6ZUS5 278 aa6.52□□□□□ -1.37
USP54-211ENST00000474929 RFPL4BQ6ZWI9 263 aa6.52□□□□□ -1.37
USP54-211ENST00000474929 H1FNTQ75WM6 255 aaPredicted RBP6.52□□□□□ -1.37
USP54-211ENST00000474929 TRIM46Q7Z4K8 759 aa6.52□□□□□ -1.37
USP54-211ENST00000474929 MIER2Q8N344 545 aa6.52□□□□□ -1.37
USP54-211ENST00000474929 KDM8Q8N371 416 aa6.52□□□□□ -1.37
USP54-211ENST00000474929 SPATA4Q8NEY3 305 aa6.52□□□□□ -1.37
USP54-211ENST00000474929 SLC38A4Q969I6 547 aa6.52□□□□□ -1.37
USP54-211ENST00000474929 EGLN2Q96KS0 407 aa6.52□□□□□ -1.37
USP54-211ENST00000474929 SLC35G5Q96KT7 338 aa6.52□□□□□ -1.37
USP54-211ENST00000474929 C16orf45Q96MC5 204 aaPredicted RBP6.52□□□□□ -1.37
USP54-211ENST00000474929 PRR25Q96S07 402 aa6.52□□□□□ -1.37
USP54-211ENST00000474929 DPH5Q9H2P9 285 aa6.52□□□□□ -1.37
USP54-211ENST00000474929 MRPL46Q9H2W6 279 aaKnown RBP6.52□□□□□ -1.37
USP54-211ENST00000474929 CCNB1IP1Q9NPC3 277 aa6.52□□□□□ -1.37
USP54-211ENST00000474929 DUX4Q9UBX2 424 aa6.52□□□□□ -1.37
USP54-211ENST00000474929 TMED5Q9Y3A6 229 aa6.52□□□□□ -1.37
USP54-211ENST00000474929 NUP214P35658 2090 aaPredicted RBP6.52□□□□□ -1.37
USP54-211ENST00000474929 C5orf49A4QMS7 147 aa6.51□□□□□ -1.37
USP54-211ENST00000474929 A8MT66 165 aa6.51□□□□□ -1.37
USP54-211ENST00000474929 M0R082 166 aa6.51□□□□□ -1.37
USP54-211ENST00000474929 EIF3HO15372 352 aaKnown RBP eCLIP6.51□□□□□ -1.37
USP54-211ENST00000474929 BCAS1O75363 584 aaPredicted RBP6.51□□□□□ -1.37
USP54-211ENST00000474929 PIAS1O75925 651 aa6.51□□□□□ -1.37
USP54-211ENST00000474929 NEFHP12036 1026 aa6.51□□□□□ -1.37
USP54-211ENST00000474929 TAC1P20366 129 aa6.51□□□□□ -1.37
USP54-211ENST00000474929 MATN1P21941 496 aa6.51□□□□□ -1.37
USP54-211ENST00000474929 PRPH2P23942 346 aa6.51□□□□□ -1.37
USP54-211ENST00000474929 SOAT1P35610 550 aa6.51□□□□□ -1.37
USP54-211ENST00000474929 WNT5AP41221 380 aa6.51□□□□□ -1.37
USP54-211ENST00000474929 ZNF84P51523 738 aa6.51□□□□□ -1.37
USP54-211ENST00000474929 ALDH16A1Q8IZ83 802 aa6.51□□□□□ -1.37
USP54-211ENST00000474929 CADM2Q8N3J6 435 aa6.51□□□□□ -1.37
USP54-211ENST00000474929 ZNF417Q8TAU3 575 aa6.51□□□□□ -1.37
USP54-211ENST00000474929 MIPOL1Q8TD10 442 aa6.51□□□□□ -1.37
USP54-211ENST00000474929 CNOT9Q92600 299 aaKnown RBP6.51□□□□□ -1.37
USP54-211ENST00000474929 MYDGFQ969H8 173 aa6.51□□□□□ -1.37
USP54-211ENST00000474929 MEGF10Q96KG7 1140 aa6.51□□□□□ -1.37
USP54-211ENST00000474929 POM121L2Q96KW2 1035 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms