RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 TEX29Q8N6K0 151 aa16.84■□□□□ 0.29
COL9A3-210ENST00000472880 PCYOX1LQ8NBM8 494 aa16.84■□□□□ 0.29
COL9A3-210ENST00000472880 NMD3Q96D46 503 aaKnown RBP16.84■□□□□ 0.29
COL9A3-210ENST00000472880 FAHD2AQ96GK7 314 aa16.84■□□□□ 0.29
COL9A3-210ENST00000472880 PRRC1Q96M27 445 aa16.84■□□□□ 0.29
COL9A3-210ENST00000472880 ALG12Q9BV10 488 aa16.84■□□□□ 0.29
COL9A3-210ENST00000472880 SAR1AQ9NR31 198 aa16.84■□□□□ 0.29
COL9A3-210ENST00000472880 GID8Q9NWU2 228 aa16.84■□□□□ 0.29
COL9A3-210ENST00000472880 HIF3AQ9Y2N7 669 aa16.84■□□□□ 0.29
COL9A3-210ENST00000472880 ANK2Q01484 3957 aa16.84■□□□□ 0.29
COL9A3-210ENST00000472880 IGKV1D-43A0A0B4J1Z2 117 aa16.83■□□□□ 0.28
COL9A3-210ENST00000472880 PLSCR5A0PG75 271 aa16.83■□□□□ 0.28
COL9A3-210ENST00000472880 C5orf49A4QMS7 147 aa16.83■□□□□ 0.28
COL9A3-210ENST00000472880 IFI30P13284 250 aa16.83■□□□□ 0.28
COL9A3-210ENST00000472880 KDELR2P33947 212 aa16.83■□□□□ 0.28
COL9A3-210ENST00000472880 ERVK-25P63136 954 aa16.83■□□□□ 0.28
COL9A3-210ENST00000472880 HFEQ30201 348 aa16.83■□□□□ 0.28
COL9A3-210ENST00000472880 SPATA46Q5T0L3 261 aa16.83■□□□□ 0.28
COL9A3-210ENST00000472880 ACSM5Q6NUN0 579 aa16.83■□□□□ 0.28
COL9A3-210ENST00000472880 SLC25A47Q6Q0C1 308 aa16.83■□□□□ 0.28
COL9A3-210ENST00000472880 THSD4Q6ZMP0 1018 aa16.83■□□□□ 0.28
COL9A3-210ENST00000472880 ZNF101Q8IZC7 436 aa16.83■□□□□ 0.28
COL9A3-210ENST00000472880 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP16.83■□□□□ 0.28
COL9A3-210ENST00000472880 OR2T12Q8NG77 320 aa16.83■□□□□ 0.28
COL9A3-210ENST00000472880 AKR7LQ8NHP1 331 aa16.83■□□□□ 0.28
COL9A3-210ENST00000472880 FNDC8Q8TC99 324 aa16.83■□□□□ 0.28
COL9A3-210ENST00000472880 IPCEF1Q8WWN9 437 aaPredicted RBP16.83■□□□□ 0.28
COL9A3-210ENST00000472880 BPIFA2Q96DR5 249 aa16.83■□□□□ 0.28
COL9A3-210ENST00000472880 ELMOD3Q96FG2 381 aa16.83■□□□□ 0.28
COL9A3-210ENST00000472880 TIMD4Q96H15 378 aa16.83■□□□□ 0.28
COL9A3-210ENST00000472880 POM121L2Q96KW2 1035 aa16.83■□□□□ 0.28
COL9A3-210ENST00000472880 RBP7Q96R05 134 aa16.83■□□□□ 0.28
COL9A3-210ENST00000472880 HTR3EA5X5Y0 456 aa16.82■□□□□ 0.28
COL9A3-210ENST00000472880 IGHMP01871 453 aa16.82■□□□□ 0.28
COL9A3-210ENST00000472880 WNT5AP41221 380 aa16.82■□□□□ 0.28
COL9A3-210ENST00000472880 GUCA1AP43080 201 aaPredicted RBP16.82■□□□□ 0.28
COL9A3-210ENST00000472880 RPL27P61353 136 aaKnown RBP16.82■□□□□ 0.28
COL9A3-210ENST00000472880 PSG4Q00888 419 aa16.82■□□□□ 0.28
COL9A3-210ENST00000472880 FAM209AQ5JX71 171 aa16.82■□□□□ 0.28
COL9A3-210ENST00000472880 THEM4Q5T1C6 240 aa16.82■□□□□ 0.28
COL9A3-210ENST00000472880 FAM205BPQ63HN1 556 aa16.82■□□□□ 0.28
COL9A3-210ENST00000472880 MICU2Q8IYU8 434 aa16.82■□□□□ 0.28
COL9A3-210ENST00000472880 ALDH16A1Q8IZ83 802 aa16.82■□□□□ 0.28
COL9A3-210ENST00000472880 ZNF418Q8TF45 676 aaPredicted RBP16.82■□□□□ 0.28
COL9A3-210ENST00000472880 LZICQ8WZA0 190 aa16.82■□□□□ 0.28
COL9A3-210ENST00000472880 WIPI2Q9Y4P8 454 aa16.82■□□□□ 0.28
COL9A3-210ENST00000472880 LOC100509620A0A075B734 347 aa16.81■□□□□ 0.28
COL9A3-210ENST00000472880 LOC100653049A0A140TA62 436 aa16.81■□□□□ 0.28
COL9A3-210ENST00000472880 SPRY3O43610 288 aa16.81■□□□□ 0.28
COL9A3-210ENST00000472880 KRT34O76011 436 aa16.81■□□□□ 0.28
COL9A3-210ENST00000472880 VENTXO95231 258 aa16.81■□□□□ 0.28
COL9A3-210ENST00000472880 MPZL1O95297 269 aa16.81■□□□□ 0.28
COL9A3-210ENST00000472880 LAP3P28838 519 aa16.81■□□□□ 0.28
COL9A3-210ENST00000472880 MPV17P39210 176 aa16.81■□□□□ 0.28
COL9A3-210ENST00000472880 CTXN1P60606 82 aa16.81■□□□□ 0.28
COL9A3-210ENST00000472880 FAM27BQ5VT28 67 aa16.81■□□□□ 0.28
COL9A3-210ENST00000472880 RFPL4BQ6ZWI9 263 aa16.81■□□□□ 0.28
COL9A3-210ENST00000472880 IGFN1Q86VF2 1251 aa16.81■□□□□ 0.28
COL9A3-210ENST00000472880 C1orf174Q8IYL3 243 aa16.81■□□□□ 0.28
COL9A3-210ENST00000472880 SEMA6DQ8NFY4 1073 aa16.81■□□□□ 0.28
COL9A3-210ENST00000472880 ABHD4Q8TB40 342 aa16.81■□□□□ 0.28
COL9A3-210ENST00000472880 SLC25A40Q8TBP6 338 aa16.81■□□□□ 0.28
COL9A3-210ENST00000472880 ZFAND2BQ8WV99 257 aa16.81■□□□□ 0.28
COL9A3-210ENST00000472880 RAB1CQ92928 201 aa16.81■□□□□ 0.28
COL9A3-210ENST00000472880 MARS2Q96GW9 593 aaKnown RBP16.81■□□□□ 0.28
COL9A3-210ENST00000472880 OR2H1Q9GZK4 316 aa16.81■□□□□ 0.28
COL9A3-210ENST00000472880 A4GNTQ9UNA3 340 aa16.81■□□□□ 0.28
COL9A3-210ENST00000472880 CACNG2Q9Y698 323 aa16.81■□□□□ 0.28
COL9A3-210ENST00000472880 A0A0G2JMP0 313 aa16.8■□□□□ 0.28
COL9A3-210ENST00000472880 A0A0X1KG70 313 aa16.8■□□□□ 0.28
COL9A3-210ENST00000472880 A0A1W2PPL8 197 aa16.8■□□□□ 0.28
COL9A3-210ENST00000472880 ELOVL7A1L3X0 281 aa16.8■□□□□ 0.28
COL9A3-210ENST00000472880 A6NIZ1 184 aa16.8■□□□□ 0.28
COL9A3-210ENST00000472880 IGHV1-46P01743 117 aa16.8■□□□□ 0.28
COL9A3-210ENST00000472880 IFNW1P05000 195 aa16.8■□□□□ 0.28
COL9A3-210ENST00000472880 CST2P09228 141 aa16.8■□□□□ 0.28
COL9A3-210ENST00000472880 MAKP20794 623 aa16.8■□□□□ 0.28
COL9A3-210ENST00000472880 RAP1BP61224 184 aa16.8■□□□□ 0.28
COL9A3-210ENST00000472880 PCBD1P61457 104 aa16.8■□□□□ 0.28
COL9A3-210ENST00000472880 RAP1AP62834 184 aa16.8■□□□□ 0.28
COL9A3-210ENST00000472880 SELENOWP63302 87 aa16.8■□□□□ 0.28
COL9A3-210ENST00000472880 MBNL2Q5VZF2 373 aaKnown RBP16.8■□□□□ 0.28
COL9A3-210ENST00000472880 C12orf54Q6X4T0 127 aa16.8■□□□□ 0.28
COL9A3-210ENST00000472880 OFCC1Q8IZS5 231 aa16.8■□□□□ 0.28
COL9A3-210ENST00000472880 CLDN22Q8N7P3 220 aa16.8■□□□□ 0.28
COL9A3-210ENST00000472880 OR4M2Q8NGB6 313 aa16.8■□□□□ 0.28
COL9A3-210ENST00000472880 KLF14Q8TD94 323 aaPredicted RBP16.8■□□□□ 0.28
COL9A3-210ENST00000472880 OR2J1Q9GZK6 312 aa16.8■□□□□ 0.28
COL9A3-210ENST00000472880 EGLN1Q9GZT9 426 aa16.8■□□□□ 0.28
COL9A3-210ENST00000472880 WNT5BQ9H1J7 359 aa16.8■□□□□ 0.28
COL9A3-210ENST00000472880 G6PC2Q9NQR9 355 aa16.8■□□□□ 0.28
COL9A3-210ENST00000472880 CYSLTR2Q9NS75 346 aa16.8■□□□□ 0.28
COL9A3-210ENST00000472880 CGGBP1Q9UFW8 167 aaPredicted RBP16.8■□□□□ 0.28
COL9A3-210ENST00000472880 CAPN7Q9Y6W3 813 aa16.8■□□□□ 0.28
COL9A3-210ENST00000472880 TRAV27A0A087WT01 109 aa16.79■□□□□ 0.28
COL9A3-210ENST00000472880 ZSCAN5BA6NJL1 495 aa16.79■□□□□ 0.28
COL9A3-210ENST00000472880 H3BSA7 217 aa16.79■□□□□ 0.28
COL9A3-210ENST00000472880 PLPP2O43688 288 aa16.79■□□□□ 0.28
COL9A3-210ENST00000472880 DEAF1O75398 565 aaPredicted RBP16.79■□□□□ 0.28
COL9A3-210ENST00000472880 RGS9O75916 674 aaPredicted RBP16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms