RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-209	ENST00000469511	C19orf18	Q8NEA5	215 aa		4.37	□□□□□ -1.71
PTPN4-209	ENST00000469511	PIK3C3	Q8NEB9	887 aa		4.37	□□□□□ -1.71
PTPN4-209	ENST00000469511	OR4A15	Q8NGL6	344 aa		4.37	□□□□□ -1.71
PTPN4-209	ENST00000469511	MFSD8	Q8NHS3	518 aa		4.37	□□□□□ -1.71
PTPN4-209	ENST00000469511	SLC25A40	Q8TBP6	338 aa		4.37	□□□□□ -1.71
PTPN4-209	ENST00000469511	AGR3	Q8TD06	166 aa		4.37	□□□□□ -1.71
PTPN4-209	ENST00000469511	MGARP	Q8TDB4	240 aa		4.37	□□□□□ -1.71
PTPN4-209	ENST00000469511	RAB40A	Q8WXH6	277 aa		4.37	□□□□□ -1.71
PTPN4-209	ENST00000469511	C11orf40	Q8WZ69	217 aa		4.37	□□□□□ -1.71
PTPN4-209	ENST00000469511	CCDC126	Q96EE4	140 aa		4.37	□□□□□ -1.71
PTPN4-209	ENST00000469511	MARS2	Q96GW9	593 aa	Known RBP	4.37	□□□□□ -1.71
PTPN4-209	ENST00000469511	METTL2A	Q96IZ6	378 aa	Known RBP	4.37	□□□□□ -1.71
PTPN4-209	ENST00000469511	TBX15	Q96SF7	602 aa		4.37	□□□□□ -1.71
PTPN4-209	ENST00000469511	ARHGDIG	Q99819	225 aa		4.37	□□□□□ -1.71
PTPN4-209	ENST00000469511	OR2J1	Q9GZK6	312 aa		4.37	□□□□□ -1.71
PTPN4-209	ENST00000469511	CDH20	Q9HBT6	801 aa		4.37	□□□□□ -1.71
PTPN4-209	ENST00000469511	TMEM165	Q9HC07	324 aa		4.37	□□□□□ -1.71
PTPN4-209	ENST00000469511	MOV10	Q9HCE1	1003 aa	Known RBP	4.37	□□□□□ -1.71
PTPN4-209	ENST00000469511	TMEM106B	Q9NUM4	274 aa		4.37	□□□□□ -1.71
PTPN4-209	ENST00000469511	EXD2	Q9NVH0	621 aa		4.37	□□□□□ -1.71
PTPN4-209	ENST00000469511	NECAP2	Q9NVZ3	263 aa		4.37	□□□□□ -1.71
PTPN4-209	ENST00000469511	SLCO1C1	Q9NYB5	712 aa		4.37	□□□□□ -1.71
PTPN4-209	ENST00000469511	LOC100509620	A0A075B734	347 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511		A0A0U1RQK1	487 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	KIR2DS1	A0A191URI9	304 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	CDHR4	A6H8M9	788 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	SHOX2	O60902	331 aa	Predicted RBP	4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	FZD7	O75084	574 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	FCN3	O75636	299 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	MFN2	O95140	757 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	AHSA1	O95433	338 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	TGDS	O95455	350 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	LY86	O95711	162 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	CYB5R3	P00387	301 aa	Predicted RBP	4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	MT-ND5	P03915	603 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	GUSB	P08236	651 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	MYZAP	P0CAP1	466 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	MYL2	P10916	166 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	IL7R	P16871	459 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	CCNO	P22674	350 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	PHB	P35232	272 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	CDKN2C	P42773	168 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	IER3	P46695	156 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	ERF	P50548	548 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	DLX1	P56177	255 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	KRTAP10-11	P60412	298 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	GNG11	P61952	73 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	BTG1	P62324	171 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	GNB2	P62879	340 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	CAV1	Q03135	178 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	COL10A1	Q03692	680 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	CD69	Q07108	199 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	GSTA3	Q16772	222 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	GFOD2	Q3B7J2	385 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	MMEL1	Q495T6	779 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	TMEM155	Q4W5P6	130 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	ESCO2	Q56NI9	601 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	XKR7	Q5GH72	579 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	DEFB121	Q5J5C9	76 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	SLC35E4	Q6ICL7	350 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	RFPL4B	Q6ZWI9	263 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	KLB	Q86Z14	1044 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	SLC22A24	Q8N4F4	322 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	ZNF283	Q8N7M2	679 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	PPP1R35	Q8TAP8	253 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	ZNF420	Q8TAQ5	688 aa	Predicted RBP	4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	KLF14	Q8TD94	323 aa	Predicted RBP	4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	TWIST2	Q8WVJ9	160 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	ITLN1	Q8WWA0	313 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	DYRK2	Q92630	601 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	MOAP1	Q96BY2	351 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	SLC47A1	Q96FL8	570 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	TEX37	Q96LM6	180 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	MOGAT1	Q96PD6	335 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	SPATA25	Q9BR10	227 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	SLC30A2	Q9BRI3	323 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	NUDT16L1	Q9BRJ7	211 aa	Known RBP	4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	PCGF1	Q9BSM1	259 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	SSBP3	Q9BWW4	388 aa	Predicted RBP	4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	ULBP2	Q9BZM5	246 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	MMP28	Q9H239	520 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	C16orf95	Q9H693	158 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	NOX4	Q9NPH5	578 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	TCF7L2	Q9NQB0	619 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	MARCO	Q9UEW3	520 aa	Predicted RBP	4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	OR5V1	Q9UGF6	321 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	MAGEL2	Q9UJ55	1249 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	UTP11	Q9Y3A2	253 aa	Known RBP	4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	DNAH1	Q9P2D7	4330 aa		4.36	□□□□□ -1.71
PTPN4-209	ENST00000469511	STAB2	Q8WWQ8	2551 aa		4.35	□□□□□ -1.71
PTPN4-209	ENST00000469511		A0A087WUJ7	227 aa		4.35	□□□□□ -1.71
PTPN4-209	ENST00000469511	SLC22A23	A1A5C7	686 aa		4.35	□□□□□ -1.71
PTPN4-209	ENST00000469511	GOLGA6L6	A8MZA4	724 aa		4.35	□□□□□ -1.71
PTPN4-209	ENST00000469511	C11orf98	E9PRG8	122 aa		4.35	□□□□□ -1.71
PTPN4-209	ENST00000469511	TMEM178B	H3BS89	294 aa		4.35	□□□□□ -1.71
PTPN4-209	ENST00000469511	AIM2	O14862	343 aa		4.35	□□□□□ -1.71
PTPN4-209	ENST00000469511	MGRN1	O60291	552 aa		4.35	□□□□□ -1.71
PTPN4-209	ENST00000469511	PLIN3	O60664	434 aa		4.35	□□□□□ -1.71
PTPN4-209	ENST00000469511	TMEM127	O75204	238 aa		4.35	□□□□□ -1.71
PTPN4-209	ENST00000469511	TSPAN9	O75954	239 aa		4.35	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 43 ms