RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 ZNF250P15622 560 aa11.95□□□□□ -0.5
USP4-206ENST00000461553 DRD4P21917 467 aa11.95□□□□□ -0.5
USP4-206ENST00000461553 STOMP27105 288 aa11.95□□□□□ -0.5
USP4-206ENST00000461553 IL2RGP31785 369 aa11.95□□□□□ -0.5
USP4-206ENST00000461553 RPL4P36578 427 aaKnown RBP11.95□□□□□ -0.5
USP4-206ENST00000461553 UCP2P55851 309 aa11.95□□□□□ -0.5
USP4-206ENST00000461553 ERVS71-1P61550 626 aa11.95□□□□□ -0.5
USP4-206ENST00000461553 ERVK-25P63136 954 aa11.95□□□□□ -0.5
USP4-206ENST00000461553 MRPS11P82912 194 aaKnown RBP11.95□□□□□ -0.5
USP4-206ENST00000461553 GLO1Q04760 184 aa11.95□□□□□ -0.5
USP4-206ENST00000461553 C8orf82Q6P1X6 216 aaPredicted RBP11.95□□□□□ -0.5
USP4-206ENST00000461553 SLC25A47Q6Q0C1 308 aa11.95□□□□□ -0.5
USP4-206ENST00000461553 MBOAT2Q6ZWT7 520 aa11.95□□□□□ -0.5
USP4-206ENST00000461553 CLDN22Q8N7P3 220 aa11.95□□□□□ -0.5
USP4-206ENST00000461553 LINC01356Q8N9X3 169 aa11.95□□□□□ -0.5
USP4-206ENST00000461553 LRRC75AQ8NAA5 344 aa11.95□□□□□ -0.5
USP4-206ENST00000461553 OR1J1Q8NGS3 322 aa11.95□□□□□ -0.5
USP4-206ENST00000461553 TMEM158Q8WZ71 300 aa11.95□□□□□ -0.5
USP4-206ENST00000461553 CMTM5Q96DZ9 223 aa11.95□□□□□ -0.5
USP4-206ENST00000461553 SOX7Q9BT81 388 aa11.95□□□□□ -0.5
USP4-206ENST00000461553 ZNF416Q9BWM5 594 aa11.95□□□□□ -0.5
USP4-206ENST00000461553 ANKRD19PQ9H560 264 aa11.95□□□□□ -0.5
USP4-206ENST00000461553 SPAG4Q9NPE6 437 aa11.95□□□□□ -0.5
USP4-206ENST00000461553 HINT3Q9NQE9 182 aaKnown RBP11.95□□□□□ -0.5
USP4-206ENST00000461553 ABCD2Q9UBJ2 740 aa11.95□□□□□ -0.5
USP4-206ENST00000461553 TMEM5Q9Y2B1 443 aa11.95□□□□□ -0.5
USP4-206ENST00000461553 ANK2Q01484 3957 aa11.94□□□□□ -0.5
USP4-206ENST00000461553 C17orf100A8MU93 164 aa11.94□□□□□ -0.5
USP4-206ENST00000461553 XKRYO14609 159 aa11.94□□□□□ -0.5
USP4-206ENST00000461553 FFAR1O14842 300 aa11.94□□□□□ -0.5
USP4-206ENST00000461553 CLPTM1O96005 669 aa11.94□□□□□ -0.5
USP4-206ENST00000461553 NCK1P16333 377 aa11.94□□□□□ -0.5
USP4-206ENST00000461553 PCMT1P22061 227 aa11.94□□□□□ -0.5
USP4-206ENST00000461553 FUT4P22083 530 aa11.94□□□□□ -0.5
USP4-206ENST00000461553 GDI2P50395 445 aaKnown RBP11.94□□□□□ -0.5
USP4-206ENST00000461553 CDH15P55291 814 aa11.94□□□□□ -0.5
USP4-206ENST00000461553 PSME3P61289 254 aa11.94□□□□□ -0.5
USP4-206ENST00000461553 PCBD1P61457 104 aa11.94□□□□□ -0.5
USP4-206ENST00000461553 MOGQ16653 247 aa11.94□□□□□ -0.5
USP4-206ENST00000461553 CR1LQ2VPA4 569 aa11.94□□□□□ -0.5
USP4-206ENST00000461553 PCGF3Q3KNV8 242 aa11.94□□□□□ -0.5
USP4-206ENST00000461553 FAM27BQ5VT28 67 aa11.94□□□□□ -0.5
USP4-206ENST00000461553 CPEB3Q8NE35 698 aaKnown RBP11.94□□□□□ -0.5
USP4-206ENST00000461553 AKR7LQ8NHP1 331 aa11.94□□□□□ -0.5
USP4-206ENST00000461553 ELAC2Q9BQ52 826 aaKnown RBP11.94□□□□□ -0.5
USP4-206ENST00000461553 REPIN1Q9BWE0 567 aaKnown RBP11.94□□□□□ -0.5
USP4-206ENST00000461553 FAM107BQ9H098 131 aa11.94□□□□□ -0.5
USP4-206ENST00000461553 NARFLQ9H6Q4 476 aa11.94□□□□□ -0.5
USP4-206ENST00000461553 KRCC1Q9NPI7 259 aaPredicted RBP11.94□□□□□ -0.5
USP4-206ENST00000461553 ZNF275Q9NSD4 429 aaPredicted RBP11.94□□□□□ -0.5
USP4-206ENST00000461553 EIF3KQ9UBQ5 218 aaKnown RBP11.94□□□□□ -0.5
USP4-206ENST00000461553 GRHPRQ9UBQ7 328 aa11.94□□□□□ -0.5
USP4-206ENST00000461553 ENPP4Q9Y6X5 453 aa11.94□□□□□ -0.5
USP4-206ENST00000461553 A0A087WUU8 490 aa11.93□□□□□ -0.5
USP4-206ENST00000461553 C5orf49A4QMS7 147 aa11.93□□□□□ -0.5
USP4-206ENST00000461553 H7C1C5 153 aa11.93□□□□□ -0.5
USP4-206ENST00000461553 PPIHO43447 177 aaKnown RBP11.93□□□□□ -0.5
USP4-206ENST00000461553 GMNNO75496 209 aa11.93□□□□□ -0.5
USP4-206ENST00000461553 PRSS23O95084 383 aa11.93□□□□□ -0.5
USP4-206ENST00000461553 TFP02787 698 aa11.93□□□□□ -0.5
USP4-206ENST00000461553 H1F0P07305 194 aaKnown RBP11.93□□□□□ -0.5
USP4-206ENST00000461553 CST2P09228 141 aa11.93□□□□□ -0.5
USP4-206ENST00000461553 MSR1P21757 451 aa11.93□□□□□ -0.5
USP4-206ENST00000461553 LAP3P28838 519 aa11.93□□□□□ -0.5
USP4-206ENST00000461553 PRDX6P30041 224 aa11.93□□□□□ -0.5
USP4-206ENST00000461553 GCH1P30793 250 aa11.93□□□□□ -0.5
USP4-206ENST00000461553 MAGEB1P43366 347 aa11.93□□□□□ -0.5
USP4-206ENST00000461553 LCN6P62502 163 aa11.93□□□□□ -0.5
USP4-206ENST00000461553 PSG4Q00888 419 aa11.93□□□□□ -0.5
USP4-206ENST00000461553 TEKQ02763 1124 aa11.93□□□□□ -0.5
USP4-206ENST00000461553 FGD3Q5JSP0 725 aa11.93□□□□□ -0.5
USP4-206ENST00000461553 FOXL2NBQ6ZUU3 175 aa11.93□□□□□ -0.5
USP4-206ENST00000461553 ALDH16A1Q8IZ83 802 aa11.93□□□□□ -0.5
USP4-206ENST00000461553 FAM156AQ8NDB6 213 aa11.93□□□□□ -0.5
USP4-206ENST00000461553 YIPF5Q969M3 257 aa11.93□□□□□ -0.5
USP4-206ENST00000461553 ZNF570Q96NI8 536 aa11.93□□□□□ -0.5
USP4-206ENST00000461553 OR2H1Q9GZK4 316 aa11.93□□□□□ -0.5
USP4-206ENST00000461553 SAMD4AQ9UPU9 718 aaKnown RBP11.93□□□□□ -0.5
USP4-206ENST00000461553 FAM32AQ9Y421 112 aaKnown RBP11.93□□□□□ -0.5
USP4-206ENST00000461553 C12orf71A8MTZ7 269 aa11.92□□□□□ -0.5
USP4-206ENST00000461553 CDC42EP2O14613 210 aa11.92□□□□□ -0.5
USP4-206ENST00000461553 TPD52L2O43399 206 aaKnown RBP11.92□□□□□ -0.5
USP4-206ENST00000461553 CD14P08571 375 aa11.92□□□□□ -0.5
USP4-206ENST00000461553 COL8A2P25067 703 aa11.92□□□□□ -0.5
USP4-206ENST00000461553 THBS2P35442 1172 aa11.92□□□□□ -0.5
USP4-206ENST00000461553 CCL8P80075 99 aa11.92□□□□□ -0.5
USP4-206ENST00000461553 KRR1Q13601 381 aaKnown RBP11.92□□□□□ -0.5
USP4-206ENST00000461553 FHL1Q13642 323 aa11.92□□□□□ -0.5
USP4-206ENST00000461553 ZNF718Q3SXZ3 478 aa11.92□□□□□ -0.5
USP4-206ENST00000461553 ZBED5Q49AG3 693 aa11.92□□□□□ -0.5
USP4-206ENST00000461553 SPATA46Q5T0L3 261 aa11.92□□□□□ -0.5
USP4-206ENST00000461553 TBPL2Q6SJ96 375 aa11.92□□□□□ -0.5
USP4-206ENST00000461553 RFPL4BQ6ZWI9 263 aa11.92□□□□□ -0.5
USP4-206ENST00000461553 TMPRSS11FQ6ZWK6 438 aa11.92□□□□□ -0.5
USP4-206ENST00000461553 GLCCI1Q86VQ1 547 aa11.92□□□□□ -0.5
USP4-206ENST00000461553 PHC2Q8IXK0 858 aa11.92□□□□□ -0.5
USP4-206ENST00000461553 C1orf174Q8IYL3 243 aa11.92□□□□□ -0.5
USP4-206ENST00000461553 ZNF101Q8IZC7 436 aa11.92□□□□□ -0.5
USP4-206ENST00000461553 CLDND2Q8NHS1 167 aa11.92□□□□□ -0.5
USP4-206ENST00000461553 ABHD4Q8TB40 342 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms