RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 CCDC167Q9P0B6 97 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 B3GAT1Q9P2W7 334 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 LPAR3Q9UBY5 353 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 NDRG4Q9ULP0 352 aaKnown RBP6.27□□□□□ -1.41
USP54-208ENST00000461520 CORO2BQ9UQ03 480 aa6.27□□□□□ -1.41
USP54-208ENST00000461520 ANK2Q01484 3957 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 TRAV36DV7A0A075B6V5 113 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 A0A087WUJ7 227 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 TRBV5-3A0A0A0MS03 114 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 A0A1B0GWA3 101 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 LOC390937A0A1W2PQ73 354 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 PRORSD1PA6NEY8 169 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 VSTM5A8MXK1 200 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 ZNF99A8MXY4 864 aaPredicted RBP6.26□□□□□ -1.41
USP54-208ENST00000461520 EVPLLA8MZ36 301 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 TRAF3IP2O43734 574 aaPredicted RBP6.26□□□□□ -1.41
USP54-208ENST00000461520 SERPINB7O75635 380 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 IGHV4-31P0DP07 118 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 GPX2P18283 190 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 HTR2AP28223 471 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 PPIFP30405 207 aaKnown RBP6.26□□□□□ -1.41
USP54-208ENST00000461520 GRPRP30550 384 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 ARR3P36575 388 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 PPOXP50336 477 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 ATP4BP51164 291 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 NCALDP61601 193 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 ARF1P84077 181 aaKnown RBP6.26□□□□□ -1.41
USP54-208ENST00000461520 C1DQ13901 141 aaKnown RBP6.26□□□□□ -1.41
USP54-208ENST00000461520 ADIPOQQ15848 244 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 CEACAM16Q2WEN9 425 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 CEP78Q5JTW2 689 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 PAGE3Q5JUK9 113 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 AGBL2Q5U5Z8 902 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 H1FNTQ75WM6 255 aaPredicted RBP6.26□□□□□ -1.41
USP54-208ENST00000461520 SLC46A3Q7Z3Q1 461 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 MSRB3Q8IXL7 192 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 TMEM123Q8N131 208 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 GPR137CQ8N3F9 429 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 SCAIQ8N9R8 606 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 ZNF540Q8NDQ6 660 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 NFKBIDQ8NI38 313 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 LRRC8CQ8TDW0 803 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 TAAR8Q969N4 342 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 SLC47A1Q96FL8 570 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 SLC41A3Q96GZ6 507 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 LRR1Q96L50 414 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 ANKRD27Q96NW4 1050 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 ZNF607Q96SK3 696 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 EPYCQ99645 322 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 EBF4Q9BQW3 602 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 PIMREGQ9BSJ6 248 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 RSPO3Q9BXY4 272 aaPredicted RBP6.26□□□□□ -1.41
USP54-208ENST00000461520 BEX2Q9BXY8 128 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 RAB1BQ9H0U4 201 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 PLK3Q9H4B4 646 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 ZNF442Q9H7R0 627 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 TMEM27Q9HBJ8 222 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 CRLF2Q9HC73 371 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 SLC52A3Q9NQ40 469 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 SELENONQ9NZV5 590 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 VAPAQ9P0L0 249 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 SEC14L4Q9UDX3 406 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 CADP27708 2225 aa6.26□□□□□ -1.41
USP54-208ENST00000461520 IGKV1D-42A0A075B6H8 117 aa6.25□□□□□ -1.41
USP54-208ENST00000461520 A0A0B4J2E0 115 aa6.25□□□□□ -1.41
USP54-208ENST00000461520 A0A1B0GX12 115 aa6.25□□□□□ -1.41
USP54-208ENST00000461520 MS4A18H0YCH9 400 aa6.25□□□□□ -1.41
USP54-208ENST00000461520 PHF1O43189 567 aaPredicted RBP6.25□□□□□ -1.41
USP54-208ENST00000461520 TPST1O60507 370 aa6.25□□□□□ -1.41
USP54-208ENST00000461520 LMX1BO60663 402 aa6.25□□□□□ -1.41
USP54-208ENST00000461520 LY6HO94772 140 aa6.25□□□□□ -1.41
USP54-208ENST00000461520 ERCC1P07992 297 aaPredicted RBP6.25□□□□□ -1.41
USP54-208ENST00000461520 OR4A8P0C604 315 aa6.25□□□□□ -1.41
USP54-208ENST00000461520 NQO1P15559 274 aaKnown RBP6.25□□□□□ -1.41
USP54-208ENST00000461520 CALCRP30988 508 aa6.25□□□□□ -1.41
USP54-208ENST00000461520 NR4A2P43354 598 aa6.25□□□□□ -1.41
USP54-208ENST00000461520 IDH3GP51553 393 aaPredicted RBP6.25□□□□□ -1.41
USP54-208ENST00000461520 UCP3P55916 312 aa6.25□□□□□ -1.41
USP54-208ENST00000461520 RGS8P57771 180 aaPredicted RBP6.25□□□□□ -1.41
USP54-208ENST00000461520 TUBA1BP68363 451 aa6.25□□□□□ -1.41
USP54-208ENST00000461520 TUBA4AP68366 448 aa6.25□□□□□ -1.41
USP54-208ENST00000461520 IL1RL1Q01638 556 aa6.25□□□□□ -1.41
USP54-208ENST00000461520 SCARB2Q14108 478 aa6.25□□□□□ -1.41
USP54-208ENST00000461520 GGTLC2Q14390 218 aa6.25□□□□□ -1.41
USP54-208ENST00000461520 OR1Q1Q15612 314 aa6.25□□□□□ -1.41
USP54-208ENST00000461520 MS4A18Q3C1V0 323 aa6.25□□□□□ -1.41
USP54-208ENST00000461520 GLIPR1L2Q4G1C9 344 aa6.25□□□□□ -1.41
USP54-208ENST00000461520 TUBA1AQ71U36 451 aa6.25□□□□□ -1.41
USP54-208ENST00000461520 COMTD1Q86VU5 262 aa6.25□□□□□ -1.41
USP54-208ENST00000461520 RANBP3LQ86VV4 465 aaPredicted RBP6.25□□□□□ -1.41
USP54-208ENST00000461520 SNX32Q86XE0 403 aa6.25□□□□□ -1.41
USP54-208ENST00000461520 UEVLDQ8IX04 471 aa6.25□□□□□ -1.41
USP54-208ENST00000461520 C20orf196Q8IYI0 205 aa6.25□□□□□ -1.41
USP54-208ENST00000461520 C10orf111Q8N326 155 aa6.25□□□□□ -1.41
USP54-208ENST00000461520 OR2M2Q96R28 347 aa6.25□□□□□ -1.41
USP54-208ENST00000461520 TMEM43Q9BTV4 400 aa6.25□□□□□ -1.41
USP54-208ENST00000461520 SHARPINQ9H0F6 387 aa6.25□□□□□ -1.41
USP54-208ENST00000461520 RABEP2Q9H5N1 569 aa6.25□□□□□ -1.41
USP54-208ENST00000461520 IKZF5Q9H5V7 419 aa6.25□□□□□ -1.41
USP54-208ENST00000461520 SLCO1B3Q9NPD5 702 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms